RegulonDB

Name:

adiC -> adiC_mRNA

Description:

Transcription of transcription unit adiC. Reaction activation by PhoB-phosphate.

Type:

transcription

Pathway Components:

adiC - PhoB-phosphate -> adiC_mRNA

Components:

Function	Name	Type
activator	PhoB-phosphate	complex
reactant	adiC	gene
product	adiC_mRNA	RNA

Name:

amn -> amn_mRNA

Description:

Transcription of transcription unit amn. Reaction activation by PhoB-phosphate.

Type:

transcription

Pathway Components:

amn - PhoB-phosphate -> amn_mRNA

Components:

Function	Name	Type
activator	PhoB-phosphate	complex
reactant	amn	gene
product	amn_mRNA	RNA

Name:

argP -> argP_mRNA

Description:

Transcription of transcription unit argP. Reaction activation by PhoB-phosphate.

Type:

transcription

Pathway Components:

argP - PhoB-phosphate -> argP_mRNA

Components:

Function	Name	Type
activator	PhoB-phosphate	complex
reactant	argP	gene
product	argP_mRNA	RNA

Name:

asr -> asr_mRNA

Description:

Transcription of transcription unit asr. Reaction activation by PhoB-phosphate.

Type:

transcription

Pathway Components:

asr - PhoB-phosphate -> asr_mRNA

Components:

Function	Name	Type
activator	PhoB-phosphate	complex
reactant	asr	gene
product	asr_mRNA	RNA

Name:

cusCFBA -> cusCFBA_mRNA

Description:

Transcription of transcription unit cusCFBA. Reaction activation by PhoB-phosphate.

Type:

transcription

Pathway Components:

cusCFBA - PhoB-phosphate -> cusCFBA_mRNA

Components:

Function	Name	Type
activator	PhoB-phosphate	complex
reactant	cusCFBA	gene
product	cusCFBA_mRNA	RNA

Name:

cusRS -> cusRS_mRNA

Description:

Transcription of transcription unit cusRS. Reaction activation by PhoB-phosphate.

Type:

transcription

Pathway Components:

cusRS - PhoB-phosphate -> cusRS_mRNA

Components:

Function	Name	Type
activator	PhoB-phosphate	complex
reactant	cusRS	gene
product	cusRS_mRNA	RNA

Name:

gadX -> gadX_mRNA

Description:

Transcription of transcription unit gadX. Reaction activation by PhoB-phosphate.

Type:

transcription

Pathway Components:

gadX - PhoB-phosphate -> gadX_mRNA

Components:

Function	Name	Type
activator	PhoB-phosphate	complex
reactant	gadX	gene
product	gadX_mRNA	RNA

Name:

gadXW -> gadXW_mRNA

Description:

Transcription of transcription unit gadXW. Reaction activation by PhoB-phosphate.

Type:

transcription

Pathway Components:

gadXW - PhoB-phosphate -> gadXW_mRNA

Components:

Function	Name	Type
activator	PhoB-phosphate	complex
reactant	gadXW	gene
product	gadXW_mRNA	RNA

Name:

mipA -> mipA_mRNA

Description:

Transcription of transcription unit mipA. Reaction activation by PhoB-phosphate.

Type:

transcription

Pathway Components:

mipA - PhoB-phosphate -> mipA_mRNA

Components:

Function	Name	Type
activator	PhoB-phosphate	complex
reactant	mipA	gene
product	mipA_mRNA	RNA

Name:

ompF -> ompF_mRNA

Description:

Transcription of transcription unit ompF. Reaction activation by PhoB-phosphate.

Type:

transcription

Pathway Components:

ompF - PhoB-phosphate -> ompF_mRNA

Components:

Function	Name	Type
activator	PhoB-phosphate	complex
reactant	ompF	gene
product	ompF_mRNA	RNA

Name:

phnCDE_1E_2FGHIJKLMNOP -> phnCDE_1E_2FGHIJKLMNOP_mRNA

Description:

Transcription of transcription unit phnCDE_1E_2FGHIJKLMNOP. Reaction activation by PhoB-phosphate.

Type:

transcription

Pathway Components:

phnCDE_1E_2FGHIJKLMNOP - PhoB-phosphate -> phnCDE_1E_2FGHIJKLMNOP_mRNA

Components:

Function	Name	Type
activator	PhoB-phosphate	complex
reactant	phnCDE_1E_2FGHIJKLMNOP	gene
product	phnCDE_1E_2FGHIJKLMNOP_mRNA	RNA

Name:

phoA-psiF -> phoA-psiF_mRNA

Description:

Transcription of transcription unit phoA-psiF. Reaction activation by PhoB-phosphate.

Type:

transcription

Pathway Components:

phoA-psiF - PhoB-phosphate -> phoA-psiF_mRNA

Components:

Function	Name	Type
activator	PhoB-phosphate	complex
reactant	phoA-psiF	gene
product	phoA-psiF_mRNA	RNA

Name:

phoBR -> phoBR_mRNA

Description:

Transcription of transcription unit phoBR. Reaction activation by PhoB-phosphate.

Type:

transcription

Pathway Components:

phoBR - PhoB-phosphate -> phoBR_mRNA

Components:

Function	Name	Type
activator	PhoB-phosphate	complex
reactant	phoBR	gene
product	phoBR_mRNA	RNA

Name:

phoE -> phoE_mRNA

Description:

Transcription of transcription unit phoE. Reaction activation by PhoB-phosphate.

Type:

transcription

Pathway Components:

phoE - PhoB-phosphate -> phoE_mRNA

Components:

Function	Name	Type
activator	PhoB-phosphate	complex
reactant	phoE	gene
product	phoE_mRNA	RNA

Name:

phoH -> phoH_mRNA

Description:

Transcription of transcription unit phoH. Reaction activation by PhoB-phosphate.

Type:

transcription

Pathway Components:

phoH - PhoB-phosphate -> phoH_mRNA

Components:

Function	Name	Type
activator	PhoB-phosphate	complex
reactant	phoH	gene
product	phoH_mRNA	RNA

Name:

phoQ -> phoQ_mRNA

Description:

Transcription of transcription unit phoQ. Reaction activation by PhoB-phosphate.

Type:

transcription

Pathway Components:

phoQ - PhoB-phosphate -> phoQ_mRNA

Components:

Function	Name	Type
activator	PhoB-phosphate	complex
reactant	phoQ	gene
product	phoQ_mRNA	RNA

Name:

phoU -> phoU_mRNA

Description:

Transcription of transcription unit phoU. Reaction activation by PhoB-phosphate.

Type:

transcription

Pathway Components:

phoU - PhoB-phosphate -> phoU_mRNA

Components:

Function	Name	Type
activator	PhoB-phosphate	complex
reactant	phoU	gene
product	phoU_mRNA	RNA

Name:

psiE -> psiE_mRNA

Description:

Transcription of transcription unit psiE. Reaction activation by PhoB-phosphate.

Type:

transcription

Pathway Components:

psiE - PhoB-phosphate -> psiE_mRNA

Components:

Function	Name	Type
activator	PhoB-phosphate	complex
reactant	psiE	gene
product	psiE_mRNA	RNA

Name:

pstS -> pstS_mRNA

Description:

Transcription of transcription unit pstS. Reaction activation by PhoB-phosphate.

Type:

transcription

Pathway Components:

pstS - PhoB-phosphate -> pstS_mRNA

Components:

Function	Name	Type
activator	PhoB-phosphate	complex
reactant	pstS	gene
product	pstS_mRNA	RNA

Name:

pstSCA -> pstSCA_mRNA

Description:

Transcription of transcription unit pstSCA. Reaction activation by PhoB-phosphate.

Type:

transcription

Pathway Components:

pstSCA - PhoB-phosphate -> pstSCA_mRNA

Components:

Function	Name	Type
activator	PhoB-phosphate	complex
reactant	pstSCA	gene
product	pstSCA_mRNA	RNA

Name:

pstSCAB-phoU -> pstSCAB-phoU_mRNA

Description:

Transcription of transcription unit pstSCAB-phoU. Reaction activation by PhoB-phosphate.

Type:

transcription

Pathway Components:

pstSCAB-phoU - PhoB-phosphate -> pstSCAB-phoU_mRNA

Components:

Function	Name	Type
activator	PhoB-phosphate	complex
reactant	pstSCAB-phoU	gene
product	pstSCAB-phoU_mRNA	RNA

Name:

tktB -> tktB_mRNA

Description:

Transcription of transcription unit tktB. Reaction activation by PhoB-phosphate.

Type:

transcription

Pathway Components:

tktB - PhoB-phosphate -> tktB_mRNA

Components:

Function	Name	Type
activator	PhoB-phosphate	complex
reactant	tktB	gene
product	tktB_mRNA	RNA

Name:

ugpBAECQ -> ugpBAECQ_mRNA

Description:

Transcription of transcription unit ugpBAECQ. Reaction activation by PhoB-phosphate. Reaction inhibition by PhoB-phosphate.

Type:

transcription

Pathway Components:

ugpBAECQ - PhoB-phosphate - PhoB-phosphate -> ugpBAECQ_mRNA

Components:

Function	Name	Type
activator	PhoB-phosphate	complex
inhibitor	PhoB-phosphate	complex
reactant	ugpBAECQ	gene
product	ugpBAECQ_mRNA	RNA

Name:

waaH -> waaH_mRNA

Description:

Transcription of transcription unit waaH. Reaction activation by PhoB-phosphate.

Type:

transcription

Pathway Components:

waaH - PhoB-phosphate -> waaH_mRNA

Components:

Function	Name	Type
activator	PhoB-phosphate	complex
reactant	waaH	gene
product	waaH_mRNA	RNA

Name:

ydfH -> ydfH_mRNA

Description:

Transcription of transcription unit ydfH. Reaction activation by PhoB-phosphate.

Type:

transcription

Pathway Components:

ydfH - PhoB-phosphate -> ydfH_mRNA

Components:

Function	Name	Type
activator	PhoB-phosphate	complex
reactant	ydfH	gene
product	ydfH_mRNA	RNA

Name:

yedX -> yedX_mRNA

Description:

Transcription of transcription unit yedX. Reaction activation by PhoB-phosphate.

Type:

transcription

Pathway Components:

yedX - PhoB-phosphate -> yedX_mRNA

Components:

Function	Name	Type
activator	PhoB-phosphate	complex
reactant	yedX	gene
product	yedX_mRNA	RNA

Name:

yegH -> yegH_mRNA

Description:

Transcription of transcription unit yegH. Reaction activation by PhoB-phosphate.

Type:

transcription

Pathway Components:

yegH - PhoB-phosphate -> yegH_mRNA

Components:

Function	Name	Type
activator	PhoB-phosphate	complex
reactant	yegH	gene
product	yegH_mRNA	RNA

Name:

yhjC -> yhjC_mRNA

Description:

Transcription of transcription unit yhjC. Reaction activation by PhoB-phosphate.

Type:

transcription

Pathway Components:

yhjC - PhoB-phosphate -> yhjC_mRNA

Components:

Function	Name	Type
activator	PhoB-phosphate	complex
reactant	yhjC	gene
product	yhjC_mRNA	RNA

Name:

ytfK -> ytfK_mRNA

Description:

Transcription of transcription unit ytfK. Reaction activation by PhoB-phosphate.

Type:

transcription

Pathway Components:

ytfK - PhoB-phosphate -> ytfK_mRNA

Components:

Function	Name	Type
activator	PhoB-phosphate	complex
reactant	ytfK	gene
product	ytfK_mRNA	RNA

Name:

cra -> cra_mRNA

Description:

Transcription of transcription unit cra. Reaction inhibition by PhoB-phosphate.

Type:

transcription

Pathway Components:

cra - PhoB-phosphate -> cra_mRNA

Components:

Function	Name	Type
inhibitor	PhoB-phosphate	complex
reactant	cra	gene
product	cra_mRNA	RNA

Name:

eda -> eda_mRNA

Description:

Transcription of transcription unit eda. Reaction inhibition by PhoB-phosphate.

Type:

transcription

Pathway Components:

eda - PhoB-phosphate -> eda_mRNA

Components:

Function	Name	Type
inhibitor	PhoB-phosphate	complex
reactant	eda	gene
product	eda_mRNA	RNA

Name:

feaR -> feaR_mRNA

Description:

Transcription of transcription unit feaR. Reaction inhibition by PhoB-phosphate.

Type:

transcription

Pathway Components:

feaR - PhoB-phosphate -> feaR_mRNA

Components:

Function	Name	Type
inhibitor	PhoB-phosphate	complex
reactant	feaR	gene
product	feaR_mRNA	RNA

Name:

pitB -> pitB_mRNA

Description:

Transcription of transcription unit pitB. Reaction inhibition by PhoB-phosphate.

Type:

transcription

Pathway Components:

pitB - PhoB-phosphate -> pitB_mRNA

Components:

Function	Name	Type
inhibitor	PhoB-phosphate	complex
reactant	pitB	gene
product	pitB_mRNA	RNA

Name:

prpR -> prpR_mRNA

Description:

Transcription of transcription unit prpR. Reaction inhibition by PhoB-phosphate.

Type:

transcription

Pathway Components:

prpR - PhoB-phosphate -> prpR_mRNA

Components:

Function	Name	Type
inhibitor	PhoB-phosphate	complex
reactant	prpR	gene
product	prpR_mRNA	RNA

Name:

sbcDC -> sbcDC_mRNA

Description:

Transcription of transcription unit sbcDC. Reaction inhibition by PhoB-phosphate.

Type:

transcription

Pathway Components:

sbcDC - PhoB-phosphate -> sbcDC_mRNA

Components:

Function	Name	Type
inhibitor	PhoB-phosphate	complex
reactant	sbcDC	gene
product	sbcDC_mRNA	RNA

Name:

feaR_mRNA -> FeaR

Description:

Translation of FeaR

Type:

translation

Pathway Components:

feaR_mRNA -> FeaR

Components:

Function	Name	Type
product	FeaR	protein
reactant	feaR_mRNA	RNA

Name:

waaH_mRNA -> WaaH

Description:

Translation of WaaH

Type:

translation

Pathway Components:

waaH_mRNA -> WaaH

Components:

Function	Name	Type
product	WaaH	protein
reactant	waaH_mRNA	RNA

Name:

glucosyl-(heptosyl)3-Kdo2-lipid A-phosphate + udp-glcua -> glucosyl-(heptosyl)3-glucosyluronate-Kdo2-lipid A-phosphate + uridine-diphosphate

Description:

Reaction transforming glucosyl-(heptosyl)3-Kdo2-lipid A-phosphate, udp-glcua into glucosyl-(heptosyl)3-glucosyluronate-Kdo2-lipid A-phosphate, uridine-diphosphate

Type:

state transition

Pathway Components:

glucosyl-(heptosyl)3-Kdo2-lipid A-phosphate + udp-glcua - WaaH -> glucosyl-(heptosyl)3-glucosyluronate-Kdo2-lipid A-phosphate + uridine-diphosphate

Components:

Function	Name	Type
catalyzer	WaaH	protein
reactant	glucosyl-(heptosyl)3-Kdo2-lipid A-phosphate	simple_molecule
product	glucosyl-(heptosyl)3-glucosyluronate-Kdo2-lipid A-phosphate	simple_molecule
reactant	udp-glcua	simple_molecule
product	uridine-diphosphate	simple_molecule

Name:

adiC_mRNA -> AdiC

Description:

Translation of AdiC

Type:

translation

Pathway Components:

adiC_mRNA -> AdiC

Components:

Function	Name	Type
product	AdiC	protein
reactant	adiC_mRNA	RNA

Name:

agmatine_Ext + arginine_Ext -> arginine + agmatine

Description:

Transport of agmatine_Ext, arginine_Ext through a bacterial membrane, leading to the presence of arginine, agmatine inside the cell.

Type:

transport

Pathway Components:

agmatine_Ext + arginine_Ext - AdiC -> arginine + agmatine

Components:

Function	Name	Type
catalyzer	AdiC	protein
product	agmatine	simple_molecule
reactant	agmatine_Ext	simple_molecule
product	arginine	simple_molecule
reactant	arginine_Ext	simple_molecule

Name:

cra_mRNA -> Cra

Description:

Translation of Cra

Type:

translation

Pathway Components:

cra_mRNA -> Cra

Components:

Function	Name	Type
product	Cra	protein
reactant	cra_mRNA	RNA

Name:

asr_mRNA -> Asr

Description:

Translation of Asr

Type:

translation

Pathway Components:

asr_mRNA -> Asr

Components:

Function	Name	Type
product	Asr	protein
reactant	asr_mRNA	RNA

Name:

gadXW_mRNA -> GadX

Description:

Translation of GadX

Type:

translation

Pathway Components:

gadXW_mRNA -> GadX

Components:

Function	Name	Type
product	GadX	protein
reactant	gadXW_mRNA	RNA

Name:

gadXW_mRNA -> GadW

Description:

Translation of GadW

Type:

translation

Pathway Components:

gadXW_mRNA -> GadW

Components:

Function	Name	Type
product	GadW	protein
reactant	gadXW_mRNA	RNA

Name:

ugpBAECQ_mRNA -> UgpB

Description:

Translation of UgpB

Type:

translation

Pathway Components:

ugpBAECQ_mRNA -> UgpB

Components:

Function	Name	Type
product	UgpB	protein
reactant	ugpBAECQ_mRNA	RNA

Name:

UgpA + UgpB + UgpC + UgpE -> UgpC-UgpA-UgpE-UgpB

Description:

Reaction transforming UgpA, UgpB, UgpC, UgpE into UgpC-UgpA-UgpE-UgpB

Type:

state transition

Pathway Components:

UgpA + UgpB + UgpC + UgpE -> UgpC-UgpA-UgpE-UgpB

Components:

Function	Name	Type
reactant	UgpA	protein
reactant	UgpB	protein
reactant	UgpC	protein
product	UgpC-UgpA-UgpE-UgpB	complex
reactant	UgpE	protein

Name:

glycerol-3-phosphate_Ext -> glycerol-3-phosphate

Description:

Transport of glycerol-3-phosphate_Ext through a bacterial membrane, leading to the presence of glycerol-3-phosphate inside the cell.

Type:

transport

Pathway Components:

glycerol-3-phosphate_Ext - UgpC-UgpA-UgpE-UgpB -> glycerol-3-phosphate

Components:

Function	Name	Type
catalyzer	UgpC-UgpA-UgpE-UgpB	complex
product	glycerol-3-phosphate	simple_molecule
reactant	glycerol-3-phosphate_Ext	simple_molecule

Name:

glycerol-3-P-OR_Ext -> glycerol-3-P-OR

Description:

Transport of glycerol-3-P-OR_Ext through a bacterial membrane, leading to the presence of glycerol-3-P-OR inside the cell.

Type:

transport

Pathway Components:

glycerol-3-P-OR_Ext - UgpC-UgpA-UgpE-UgpB -> glycerol-3-P-OR

Components:

Function	Name	Type
catalyzer	UgpC-UgpA-UgpE-UgpB	complex
product	glycerol-3-P-OR	simple_molecule
reactant	glycerol-3-P-OR_Ext	simple_molecule

Name:

ugpBAECQ_mRNA -> UgpA

Description:

Translation of UgpA

Type:

translation

Pathway Components:

ugpBAECQ_mRNA -> UgpA

Components:

Function	Name	Type
product	UgpA	protein
reactant	ugpBAECQ_mRNA	RNA

Name:

ugpBAECQ_mRNA -> UgpE

Description:

Translation of UgpE

Type:

translation

Pathway Components:

ugpBAECQ_mRNA -> UgpE

Components:

Function	Name	Type
product	UgpE	protein
reactant	ugpBAECQ_mRNA	RNA

Name:

ugpBAECQ_mRNA -> UgpC

Description:

Translation of UgpC

Type:

translation

Pathway Components:

ugpBAECQ_mRNA -> UgpC

Components:

Function	Name	Type
product	UgpC	protein
reactant	ugpBAECQ_mRNA	RNA

Name:

ugpBAECQ_mRNA -> UgpQ

Description:

Translation of UgpQ

Type:

translation

Pathway Components:

ugpBAECQ_mRNA -> UgpQ

Components:

Function	Name	Type
product	UgpQ	protein
reactant	ugpBAECQ_mRNA	RNA

Name:

glycerol-3-P-OR -> glycerol-3-phosphate + alcohol

Description:

Reaction transforming glycerol-3-P-OR into glycerol-3-phosphate, alcohol

Type:

state transition

Pathway Components:

glycerol-3-P-OR - UgpQ -> glycerol-3-phosphate + alcohol

Components:

Function	Name	Type
catalyzer	UgpQ	protein
product	alcohol	simple_molecule
reactant	glycerol-3-P-OR	simple_molecule
product	glycerol-3-phosphate	simple_molecule

Name:

diglycerol phosphate -> glycerol-3-phosphate + glycerol

Description:

Reaction transforming diglycerol phosphate into glycerol-3-phosphate, glycerol

Type:

state transition

Pathway Components:

diglycerol phosphate - UgpQ -> glycerol-3-phosphate + glycerol

Components:

Function	Name	Type
catalyzer	UgpQ	protein
reactant	diglycerol phosphate	simple_molecule
product	glycerol	simple_molecule
product	glycerol-3-phosphate	simple_molecule

Name:

glycerophosphoserine -> glycerol-3-phosphate + serine

Description:

Reaction transforming glycerophosphoserine into glycerol-3-phosphate, serine

Type:

state transition

Pathway Components:

glycerophosphoserine - UgpQ -> glycerol-3-phosphate + serine

Components:

Function	Name	Type
catalyzer	UgpQ	protein
product	glycerol-3-phosphate	simple_molecule
reactant	glycerophosphoserine	simple_molecule
product	serine	simple_molecule

Name:

1-glycerophosphorylethanolamine -> glycerol-3-phosphate + colamine

Description:

Reaction transforming 1-glycerophosphorylethanolamine into glycerol-3-phosphate, colamine

Type:

state transition

Pathway Components:

1-glycerophosphorylethanolamine - UgpQ -> glycerol-3-phosphate + colamine

Components:

Function	Name	Type
reactant	1-glycerophosphorylethanolamine	simple_molecule
catalyzer	UgpQ	protein
product	colamine	simple_molecule
product	glycerol-3-phosphate	simple_molecule

Name:

ydfH_mRNA -> YdfH

Description:

Translation of YdfH

Type:

translation

Pathway Components:

ydfH_mRNA -> YdfH

Components:

Function	Name	Type
product	YdfH	protein
reactant	ydfH_mRNA	RNA

Name:

pstSCA_mRNA -> PstS

Description:

Translation of PstS

Type:

translation

Pathway Components:

pstSCA_mRNA -> PstS

Components:

Function	Name	Type
product	PstS	protein
reactant	pstSCA_mRNA	RNA

Name:

PstS + PstC + PstB + PstA -> PstB-PstA-PstC-PstS

Description:

Reaction transforming PstS, PstC, PstB, PstA into PstB-PstA-PstC-PstS

Type:

state transition

Pathway Components:

PstS + PstC + PstB + PstA -> PstB-PstA-PstC-PstS

Components:

Function	Name	Type
reactant	PstA	protein
reactant	PstB	protein
product	PstB-PstA-PstC-PstS	complex
reactant	PstC	protein
reactant	PstS	protein

Name:

pstSCA_mRNA -> PstC

Description:

Translation of PstC

Type:

translation

Pathway Components:

pstSCA_mRNA -> PstC

Components:

Function	Name	Type
product	PstC	protein
reactant	pstSCA_mRNA	RNA

Name:

pstSCA_mRNA -> PstA

Description:

Translation of PstA

Type:

translation

Pathway Components:

pstSCA_mRNA -> PstA

Components:

Function	Name	Type
product	PstA	protein
reactant	pstSCA_mRNA	RNA

Name:

eda_mRNA -> Eda

Description:

Translation of Eda

Type:

translation

Pathway Components:

eda_mRNA -> Eda

Components:

Function	Name	Type
product	Eda	protein
reactant	eda_mRNA	RNA

Name:

KDGP -> glyceraldehyde-P + pyruvate

Description:

Reaction transforming KDGP into glyceraldehyde-P, pyruvate

Type:

state transition

Pathway Components:

KDGP - Eda - 6-p gluconate - glyceraldehyde-P -> glyceraldehyde-P + pyruvate

Components:

Function	Name	Type
inhibitor	6-p gluconate	simple_molecule
catalyzer	Eda	protein
reactant	KDGP	simple_molecule
inhibitor	glyceraldehyde-P	simple_molecule
product	glyceraldehyde-P	simple_molecule
product	pyruvate	simple_molecule

Name:

4-hydroxy-2-oxoglutarate -> glyoxylate + pyruvate

Description:

Reaction transforming 4-hydroxy-2-oxoglutarate into glyoxylate, pyruvate

Type:

state transition

Pathway Components:

4-hydroxy-2-oxoglutarate - Eda - glyoxylate -> glyoxylate + pyruvate

Components:

Function	Name	Type
reactant	4-hydroxy-2-oxoglutarate	simple_molecule
catalyzer	Eda	protein
inhibitor	glyoxylate	simple_molecule
product	glyoxylate	simple_molecule
product	pyruvate	simple_molecule

Name:

oxalacetate -> pyruvate + CO2

Description:

Reaction transforming oxalacetate into pyruvate, CO2

Type:

state transition

Pathway Components:

oxalacetate - Eda -> pyruvate + CO2

Components:

Function	Name	Type
product	CO2	simple_molecule
catalyzer	Eda	protein
reactant	oxalacetate	simple_molecule
product	pyruvate	simple_molecule

Name:

phoH_mRNA -> PhoH

Description:

Translation of PhoH

Type:

translation

Pathway Components:

phoH_mRNA -> PhoH

Components:

Function	Name	Type
product	PhoH	protein
reactant	phoH_mRNA	RNA

Name:

phnCDE_1E_2FGHIJKLMNOP_mRNA -> PhnC

Description:

Translation of PhnC

Type:

translation

Pathway Components:

phnCDE_1E_2FGHIJKLMNOP_mRNA -> PhnC

Components:

Function	Name	Type
product	PhnC	protein
reactant	phnCDE_1E_2FGHIJKLMNOP_mRNA	RNA

Name:

PhnC + Phn + NP -> PhnC-NP-Phn

Description:

Reaction transforming PhnC, Phn, NP into PhnC-NP-Phn

Type:

state transition

Pathway Components:

PhnC + Phn + NP -> PhnC-NP-Phn

Components:

Function	Name	Type
reactant	NP	protein
reactant	Phn	protein
reactant	PhnC	protein
product	PhnC-NP-Phn	complex

Name:

alkylphosphonate_Ext -> alkylphosphonate

Description:

Transport of alkylphosphonate_Ext through a bacterial membrane, leading to the presence of alkylphosphonate inside the cell.

Type:

transport

Pathway Components:

alkylphosphonate_Ext - PhnC-NP-Phn -> alkylphosphonate

Components:

Function	Name	Type
catalyzer	PhnC-NP-Phn	complex
product	alkylphosphonate	simple_molecule
reactant	alkylphosphonate_Ext	simple_molecule

Name:

aminoalkylphosphonate_Ext -> aminoalkylphosphonate

Description:

Transport of aminoalkylphosphonate_Ext through a bacterial membrane, leading to the presence of aminoalkylphosphonate inside the cell.

Type:

transport

Pathway Components:

aminoalkylphosphonate_Ext - PhnC-NP-Phn -> aminoalkylphosphonate

Components:

Function	Name	Type
catalyzer	PhnC-NP-Phn	complex
product	aminoalkylphosphonate	simple_molecule
reactant	aminoalkylphosphonate_Ext	simple_molecule

Name:

phnCDE_1E_2FGHIJKLMNOP_mRNA -> NP

Description:

Translation of NP

Type:

translation

Pathway Components:

phnCDE_1E_2FGHIJKLMNOP_mRNA -> NP

Components:

Function	Name	Type
product	NP	protein
reactant	phnCDE_1E_2FGHIJKLMNOP_mRNA	RNA

Name:

phnCDE_1E_2FGHIJKLMNOP_mRNA -> PhnF

Description:

Translation of PhnF

Type:

translation

Pathway Components:

phnCDE_1E_2FGHIJKLMNOP_mRNA -> PhnF

Components:

Function	Name	Type
product	PhnF	protein
reactant	phnCDE_1E_2FGHIJKLMNOP_mRNA	RNA

Name:

phnCDE_1E_2FGHIJKLMNOP_mRNA -> PhnG

Description:

Translation of PhnG

Type:

translation

Pathway Components:

phnCDE_1E_2FGHIJKLMNOP_mRNA -> PhnG

Components:

Function	Name	Type
product	PhnG	protein
reactant	phnCDE_1E_2FGHIJKLMNOP_mRNA	RNA

Name:

PhnH + PhnJ + PhnG + PhnI -> PhnJ-PhnI-PhnH-PhnG

Description:

Reaction transforming PhnH, PhnJ, PhnG, PhnI into PhnJ-PhnI-PhnH-PhnG

Type:

state transition

Pathway Components:

PhnH + PhnJ + PhnG + PhnI -> PhnJ-PhnI-PhnH-PhnG

Components:

Function	Name	Type
reactant	PhnG	protein
reactant	PhnH	protein
reactant	PhnI	protein
reactant	PhnJ	protein
product	PhnJ-PhnI-PhnH-PhnG	complex

Name:

PhnH + PhnL + PhnI + PhnG -> PhnL-PhnH-PhnG-PhnI

Description:

Reaction transforming PhnH, PhnL, PhnI, PhnG into PhnL-PhnH-PhnG-PhnI

Type:

state transition

Pathway Components:

PhnH + PhnL + PhnI + PhnG -> PhnL-PhnH-PhnG-PhnI

Components:

Function	Name	Type
reactant	PhnG	protein
reactant	PhnH	protein
reactant	PhnI	protein
reactant	PhnL	protein
product	PhnL-PhnH-PhnG-PhnI	complex

Name:

2-N-acetamidomethylphosphonate -> 5-triphospho-α-D-ribosyl-1-(2-N-acetamidomethylphosphonate) + adenine

Description:

Reaction transforming 2-N-acetamidomethylphosphonate into 5-triphospho-α-D-ribosyl-1-(2-N-acetamidomethylphosphonate), adenine

Type:

state transition

Pathway Components:

2-N-acetamidomethylphosphonate - PhnL-PhnH-PhnG-PhnI -> 5-triphospho-α-D-ribosyl-1-(2-N-acetamidomethylphosphonate) + adenine

Components:

Function	Name	Type
reactant	2-N-acetamidomethylphosphonate	simple_molecule
product	5-triphospho-α-D-ribosyl-1-(2-N-acetamidomethylphosphonate)	simple_molecule
catalyzer	PhnL-PhnH-PhnG-PhnI	complex
product	adenine	simple_molecule

Name:

MePn -> α-D-ribose-1-methylphosphonate-5-triphosphate + adenine

Description:

Reaction transforming MePn into α-D-ribose-1-methylphosphonate-5-triphosphate, adenine

Type:

state transition

Pathway Components:

MePn - PhnL-PhnH-PhnG-PhnI -> α-D-ribose-1-methylphosphonate-5-triphosphate + adenine

Components:

Function	Name	Type
product	α-D-ribose-1-methylphosphonate-5-triphosphate	simple_molecule
reactant	MePn	simple_molecule
catalyzer	PhnL-PhnH-PhnG-PhnI	complex
product	adenine	simple_molecule

Name:

phnCDE_1E_2FGHIJKLMNOP_mRNA -> PhnH

Description:

Translation of PhnH

Type:

translation

Pathway Components:

phnCDE_1E_2FGHIJKLMNOP_mRNA -> PhnH

Components:

Function	Name	Type
product	PhnH	protein
reactant	phnCDE_1E_2FGHIJKLMNOP_mRNA	RNA

Name:

phnCDE_1E_2FGHIJKLMNOP_mRNA -> PhnI

Description:

Translation of PhnI

Type:

translation

Pathway Components:

phnCDE_1E_2FGHIJKLMNOP_mRNA -> PhnI

Components:

Function	Name	Type
product	PhnI	protein
reactant	phnCDE_1E_2FGHIJKLMNOP_mRNA	RNA

Name:

phnCDE_1E_2FGHIJKLMNOP_mRNA -> PhnJ

Description:

Translation of PhnJ

Type:

translation

Pathway Components:

phnCDE_1E_2FGHIJKLMNOP_mRNA -> PhnJ

Components:

Function	Name	Type
product	PhnJ	protein
reactant	phnCDE_1E_2FGHIJKLMNOP_mRNA	RNA

Name:

1-(2-N-acetamidomethylphosphonato) 5-phospho-α-D-ribose + A(H2) + SAM -> 5-phospho-α-D-ribose 1,2-cyclic phosphate + N-methylacetamide + 5'-deoxyadenosine + methionine + acceptors

Description:

Reaction transforming 1-(2-N-acetamidomethylphosphonato) 5-phospho-α-D-ribose, A(H2), SAM into 5-phospho-α-D-ribose 1,2-cyclic phosphate, N-methylacetamide , 5'-deoxyadenosine , methionine , acceptors

Type:

state transition

Pathway Components:

1-(2-N-acetamidomethylphosphonato) 5-phospho-α-D-ribose + A(H2) + SAM - PhnJ -> 5-phospho-α-D-ribose 1,2-cyclic phosphate + N-methylacetamide + 5'-deoxyadenosine + methionine + acceptors

Components:

Show/Hide Components Table

Function	Name	Type
reactant	1-(2-N-acetamidomethylphosphonato) 5-phospho-α-D-ribose	simple_molecule
product	5'-deoxyadenosine	simple_molecule
product	5-phospho-α-D-ribose 1,2-cyclic phosphate	simple_molecule
reactant	A(H2)	simple_molecule
product	N-methylacetamide	simple_molecule
catalyzer	PhnJ	protein
reactant	SAM	simple_molecule
product	acceptors	simple_molecule
product	methionine	simple_molecule

Name:

α-D-ribose-1-methylphosphonate 5-phosphate + A(H2) + SAM -> 5-phospho-α-D-ribose 1,2-cyclic phosphate + 5'-deoxyadenosine + methionine + acceptors + methane

Description:

Reaction transforming α-D-ribose-1-methylphosphonate 5-phosphate, A(H2), SAM into 5-phospho-α-D-ribose 1,2-cyclic phosphate, 5'-deoxyadenosine , methionine , acceptors , methane

Type:

state transition

Pathway Components:

α-D-ribose-1-methylphosphonate 5-phosphate + A(H2) + SAM - PhnJ -> 5-phospho-α-D-ribose 1,2-cyclic phosphate + 5'-deoxyadenosine + methionine + acceptors + methane

Components:

Show/Hide Components Table

Function	Name	Type
reactant	α-D-ribose-1-methylphosphonate 5-phosphate	simple_molecule
product	5'-deoxyadenosine	simple_molecule
product	5-phospho-α-D-ribose 1,2-cyclic phosphate	simple_molecule
reactant	A(H2)	simple_molecule
catalyzer	PhnJ	protein
reactant	SAM	simple_molecule
product	acceptors	simple_molecule
product	methane	simple_molecule
product	methionine	simple_molecule

Name:

phnCDE_1E_2FGHIJKLMNOP_mRNA -> PhnK

Description:

Translation of PhnK

Type:

translation

Pathway Components:

phnCDE_1E_2FGHIJKLMNOP_mRNA -> PhnK

Components:

Function	Name	Type
product	PhnK	protein
reactant	phnCDE_1E_2FGHIJKLMNOP_mRNA	RNA

Name:

phnCDE_1E_2FGHIJKLMNOP_mRNA -> PhnL

Description:

Translation of PhnL

Type:

translation

Pathway Components:

phnCDE_1E_2FGHIJKLMNOP_mRNA -> PhnL

Components:

Function	Name	Type
product	PhnL	protein
reactant	phnCDE_1E_2FGHIJKLMNOP_mRNA	RNA

Name:

phnCDE_1E_2FGHIJKLMNOP_mRNA -> PhnM

Description:

Translation of PhnM

Type:

translation

Pathway Components:

phnCDE_1E_2FGHIJKLMNOP_mRNA -> PhnM

Components:

Function	Name	Type
product	PhnM	protein
reactant	phnCDE_1E_2FGHIJKLMNOP_mRNA	RNA

Name:

5-triphospho-α-D-ribosyl-1-(2-N-acetamidomethylphosphonate) -> 1-(2-N-acetamidomethylphosphonato) 5-phospho-α-D-ribose + diphosphate

Description:

Reaction transforming 5-triphospho-α-D-ribosyl-1-(2-N-acetamidomethylphosphonate) into 1-(2-N-acetamidomethylphosphonato) 5-phospho-α-D-ribose, diphosphate

Type:

state transition

Pathway Components:

5-triphospho-α-D-ribosyl-1-(2-N-acetamidomethylphosphonate) - PhnM -> 1-(2-N-acetamidomethylphosphonato) 5-phospho-α-D-ribose + diphosphate

Components:

Function	Name	Type
product	1-(2-N-acetamidomethylphosphonato) 5-phospho-α-D-ribose	simple_molecule
reactant	5-triphospho-α-D-ribosyl-1-(2-N-acetamidomethylphosphonate)	simple_molecule
catalyzer	PhnM	protein
product	diphosphate	simple_molecule

Name:

α-D-ribose-1-methylphosphonate-5-triphosphate -> α-D-ribose-1-methylphosphonate 5-phosphate + diphosphate

Description:

Reaction transforming α-D-ribose-1-methylphosphonate-5-triphosphate into α-D-ribose-1-methylphosphonate 5-phosphate, diphosphate

Type:

state transition

Pathway Components:

α-D-ribose-1-methylphosphonate-5-triphosphate - PhnM -> α-D-ribose-1-methylphosphonate 5-phosphate + diphosphate

Components:

Function	Name	Type
product	α-D-ribose-1-methylphosphonate 5-phosphate	simple_molecule
reactant	α-D-ribose-1-methylphosphonate-5-triphosphate	simple_molecule
catalyzer	PhnM	protein
product	diphosphate	simple_molecule

Name:

phnCDE_1E_2FGHIJKLMNOP_mRNA -> PhnN

Description:

Translation of PhnN

Type:

translation

Pathway Components:

phnCDE_1E_2FGHIJKLMNOP_mRNA -> PhnN

Components:

Function	Name	Type
product	PhnN	protein
reactant	phnCDE_1E_2FGHIJKLMNOP_mRNA	RNA

Name:

ribose-1,5-bisphosphate -> PRPP

Description:

Reaction transforming ribose-1,5-bisphosphate into PRPP

Type:

state transition

Pathway Components:

ribose-1,5-bisphosphate - PhnN -> PRPP

Components:

Function	Name	Type
product	PRPP	simple_molecule
catalyzer	PhnN	protein
reactant	ribose-1,5-bisphosphate	simple_molecule

Name:

phnCDE_1E_2FGHIJKLMNOP_mRNA -> PhnO

Description:

Translation of PhnO

Type:

translation

Pathway Components:

phnCDE_1E_2FGHIJKLMNOP_mRNA -> PhnO

Components:

Function	Name	Type
product	PhnO	protein
reactant	phnCDE_1E_2FGHIJKLMNOP_mRNA	RNA

Name:

acetyl-CoA + AMPn -> 2-N-acetamidomethylphosphonate + coenzyme A

Description:

Reaction transforming acetyl-CoA, AMPn into 2-N-acetamidomethylphosphonate, coenzyme A

Type:

state transition

Pathway Components:

acetyl-CoA + AMPn - PhnO -> 2-N-acetamidomethylphosphonate + coenzyme A

Components:

Function	Name	Type
product	2-N-acetamidomethylphosphonate	simple_molecule
reactant	AMPn	simple_molecule
catalyzer	PhnO	protein
reactant	acetyl-CoA	simple_molecule
product	coenzyme A	simple_molecule

Name:

(S)-1-aminoethylphosphonate + acetyl-CoA -> [(1S)-1-acetamidoethyl]phosphonate + coenzyme A

Description:

Reaction transforming (S)-1-aminoethylphosphonate, acetyl-CoA into [(1S)-1-acetamidoethyl]phosphonate, coenzyme A

Type:

state transition

Pathway Components:

(S)-1-aminoethylphosphonate + acetyl-CoA - PhnO -> [(1S)-1-acetamidoethyl]phosphonate + coenzyme A

Components:

Function	Name	Type
reactant	(S)-1-aminoethylphosphonate	simple_molecule
catalyzer	PhnO	protein
product	[(1S)-1-acetamidoethyl]phosphonate	simple_molecule
reactant	acetyl-CoA	simple_molecule
product	coenzyme A	simple_molecule

Name:

acetyl-CoA + 2-AEPn -> (2-acetamidoethyl)phosphonate + coenzyme A

Description:

Reaction transforming acetyl-CoA, 2-AEPn into (2-acetamidoethyl)phosphonate, coenzyme A

Type:

state transition

Pathway Components:

acetyl-CoA + 2-AEPn - PhnO -> (2-acetamidoethyl)phosphonate + coenzyme A

Components:

Function	Name	Type
product	(2-acetamidoethyl)phosphonate	simple_molecule
reactant	2-AEPn	simple_molecule
catalyzer	PhnO	protein
reactant	acetyl-CoA	simple_molecule
product	coenzyme A	simple_molecule

Name:

[(R)-1-aminoethyl]phosphonate + acetyl-CoA -> [(1R)-1-acetamidoethyl]phosphonate + coenzyme A

Description:

Reaction transforming [(R)-1-aminoethyl]phosphonate, acetyl-CoA into [(1R)-1-acetamidoethyl]phosphonate, coenzyme A

Type:

state transition

Pathway Components:

[(R)-1-aminoethyl]phosphonate + acetyl-CoA - PhnO -> [(1R)-1-acetamidoethyl]phosphonate + coenzyme A

Components:

Function	Name	Type
catalyzer	PhnO	protein
product	[(1R)-1-acetamidoethyl]phosphonate	simple_molecule
reactant	[(R)-1-aminoethyl]phosphonate	simple_molecule
reactant	acetyl-CoA	simple_molecule
product	coenzyme A	simple_molecule

Name:

phnCDE_1E_2FGHIJKLMNOP_mRNA -> PhnP

Description:

Translation of PhnP

Type:

translation

Pathway Components:

phnCDE_1E_2FGHIJKLMNOP_mRNA -> PhnP

Components:

Function	Name	Type
product	PhnP	protein
reactant	phnCDE_1E_2FGHIJKLMNOP_mRNA	RNA

Name:

5-phospho-α-D-ribose 1,2-cyclic phosphate -> ribose-1,5-bisphosphate

Description:

Reaction transforming 5-phospho-α-D-ribose 1,2-cyclic phosphate into ribose-1,5-bisphosphate

Type:

state transition

Pathway Components:

5-phospho-α-D-ribose 1,2-cyclic phosphate - PhnP -> ribose-1,5-bisphosphate

Components:

Function	Name	Type
reactant	5-phospho-α-D-ribose 1,2-cyclic phosphate	simple_molecule
catalyzer	PhnP	protein
product	ribose-1,5-bisphosphate	simple_molecule

Name:

ytfK_mRNA -> YtfK

Description:

Translation of YtfK

Type:

translation

Pathway Components:

ytfK_mRNA -> YtfK

Components:

Function	Name	Type
product	YtfK	protein
reactant	ytfK_mRNA	RNA

Name:

amn_mRNA -> Amn

Description:

Translation of Amn

Type:

translation

Pathway Components:

amn_mRNA -> Amn

Components:

Function	Name	Type
product	Amn	protein
reactant	amn_mRNA	RNA

Name:

cusRS_mRNA -> CusR

Description:

Translation of CusR

Type:

translation

Pathway Components:

cusRS_mRNA -> CusR

Components:

Function	Name	Type
product	CusR	protein
reactant	cusRS_mRNA	RNA

Name:

cusRS_mRNA -> CusS

Description:

Translation of CusS

Type:

translation

Pathway Components:

cusRS_mRNA -> CusS

Components:

Function	Name	Type
product	CusS	protein
reactant	cusRS_mRNA	RNA

Name:

pitB_mRNA -> PitB

Description:

Translation of PitB

Type:

translation

Pathway Components:

pitB_mRNA -> PitB

Components:

Function	Name	Type
product	PitB	protein
reactant	pitB_mRNA	RNA

Name:

arsenate_Ext -> arsenate

Description:

Transport of arsenate_Ext through a bacterial membrane, leading to the presence of arsenate inside the cell.

Type:

transport

Pathway Components:

arsenate_Ext - PitB -> arsenate

Components:

Function	Name	Type
catalyzer	PitB	protein
product	arsenate	simple_molecule
reactant	arsenate_Ext	simple_molecule

Name:

calcium hydrogenphosphate_Ext -> calcium hydrogenphosphate

Description:

Transport of calcium hydrogenphosphate_Ext through a bacterial membrane, leading to the presence of calcium hydrogenphosphate inside the cell.

Type:

transport

Pathway Components:

calcium hydrogenphosphate_Ext - PitB -> calcium hydrogenphosphate

Components:

Function	Name	Type
catalyzer	PitB	protein
product	calcium hydrogenphosphate	simple_molecule
reactant	calcium hydrogenphosphate_Ext	simple_molecule

Name:

magnesium hydrogenphosphate_Ext -> magnesium hydrogenphosphate

Description:

Transport of magnesium hydrogenphosphate_Ext through a bacterial membrane, leading to the presence of magnesium hydrogenphosphate inside the cell.

Type:

transport

Pathway Components:

magnesium hydrogenphosphate_Ext - PitB -> magnesium hydrogenphosphate

Components:

Function	Name	Type
catalyzer	PitB	protein
product	magnesium hydrogenphosphate	simple_molecule
reactant	magnesium hydrogenphosphate_Ext	simple_molecule

Name:

pstS_mRNA -> PstS

Description:

Translation of PstS

Type:

translation

Pathway Components:

pstS_mRNA -> PstS

Components:

Function	Name	Type
product	PstS	protein
reactant	pstS_mRNA	RNA

Name:

argP_mRNA -> ArgP

Description:

Translation of ArgP

Type:

translation

Pathway Components:

argP_mRNA -> ArgP

Components:

Function	Name	Type
product	ArgP	protein
reactant	argP_mRNA	RNA

Name:

yegH_mRNA -> YegH

Description:

Translation of YegH

Type:

translation

Pathway Components:

yegH_mRNA -> YegH

Components:

Function	Name	Type
product	YegH	protein
reactant	yegH_mRNA	RNA

Name:

sbcDC_mRNA -> SbcD

Description:

Translation of SbcD

Type:

translation

Pathway Components:

sbcDC_mRNA -> SbcD

Components:

Function	Name	Type
product	SbcD	protein
reactant	sbcDC_mRNA	RNA

Name:

SbcC + SbcD -> SbcC-SbcD

Description:

Reaction transforming SbcC, SbcD into SbcC-SbcD

Type:

state transition

Pathway Components:

SbcC + SbcD -> SbcC-SbcD

Components:

Function	Name	Type
reactant	SbcC	protein
product	SbcC-SbcD	complex
reactant	SbcD	protein

Name:

DNA(N) -> deoxynucleoside monophosphate + phosphate + DNA(N)

Description:

Reaction transforming DNA(N) into deoxynucleoside monophosphate, phosphate , DNA(N)

Type:

state transition

Pathway Components:

DNA(N) - SbcC-SbcD -> deoxynucleoside monophosphate + phosphate + DNA(N)

Components:

Function	Name	Type
product	DNA(N)	simple_molecule
reactant	DNA(N)	simple_molecule
catalyzer	SbcC-SbcD	complex
product	deoxynucleoside monophosphate	simple_molecule
product	phosphate	simple_molecule

Name:

sbcDC_mRNA -> SbcC

Description:

Translation of SbcC

Type:

translation

Pathway Components:

sbcDC_mRNA -> SbcC

Components:

Function	Name	Type
product	SbcC	protein
reactant	sbcDC_mRNA	RNA

Name:

ompF_mRNA -> OmpF

Description:

Translation of OmpF

Type:

translation

Pathway Components:

ompF_mRNA -> OmpF

Components:

Function	Name	Type
product	OmpF	protein
reactant	ompF_mRNA	RNA

Name:

hydrophilic solute or ion 600 Da_Ext -> hydrophilic solute or ion 600 Da

Description:

Transport of hydrophilic solute or ion 600 Da_Ext through a bacterial membrane, leading to the presence of hydrophilic solute or ion 600 Da inside the cell.

Type:

transport

Pathway Components:

hydrophilic solute or ion 600 Da_Ext - OmpF - PhoE -> hydrophilic solute or ion 600 Da

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	hydrophilic solute or ion 600 Da	simple_molecule
reactant	hydrophilic solute or ion 600 Da_Ext	simple_molecule

Name:

organophosphorus compound_Ext -> organophosphorus compound

Description:

Transport of organophosphorus compound_Ext through a bacterial membrane, leading to the presence of organophosphorus compound inside the cell.

Type:

transport

Pathway Components:

organophosphorus compound_Ext - OmpF - PhoE -> organophosphorus compound

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	organophosphorus compound	simple_molecule
reactant	organophosphorus compound_Ext	simple_molecule

Name:

glycoside_Ext -> glycoside

Description:

Transport of glycoside_Ext through a bacterial membrane, leading to the presence of glycoside inside the cell.

Type:

transport

Pathway Components:

glycoside_Ext - OmpF - PhoE -> glycoside

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	glycoside	simple_molecule
reactant	glycoside_Ext	simple_molecule

Name:

sugar_Ext -> sugar

Description:

Transport of sugar_Ext through a bacterial membrane, leading to the presence of sugar inside the cell.

Type:

transport

Pathway Components:

sugar_Ext - OmpF - PhoE -> sugar

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	sugar	simple_molecule
reactant	sugar_Ext	simple_molecule

Name:

beta-Neu5Ac_Ext -> beta-Neu5Ac

Description:

Transport of beta-Neu5Ac_Ext through a bacterial membrane, leading to the presence of beta-Neu5Ac inside the cell.

Type:

transport

Pathway Components:

beta-Neu5Ac_Ext - OmpF - PhoE -> beta-Neu5Ac

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	beta-Neu5Ac	simple_molecule
reactant	beta-Neu5Ac_Ext	simple_molecule

Name:

N-acetylneuraminate_Ext -> N-acetylneuraminate

Description:

Transport of N-acetylneuraminate_Ext through a bacterial membrane, leading to the presence of N-acetylneuraminate inside the cell.

Type:

transport

Pathway Components:

N-acetylneuraminate_Ext - OmpF - PhoE -> N-acetylneuraminate

Components:

Function	Name	Type
product	N-acetylneuraminate	simple_molecule
reactant	N-acetylneuraminate_Ext	simple_molecule
catalyzer	OmpF	protein
catalyzer	PhoE	protein

Name:

sugar phosphate_Ext -> sugar phosphate

Description:

Transport of sugar phosphate_Ext through a bacterial membrane, leading to the presence of sugar phosphate inside the cell.

Type:

transport

Pathway Components:

sugar phosphate_Ext - OmpF - PhoE -> sugar phosphate

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	sugar phosphate	simple_molecule
reactant	sugar phosphate_Ext	simple_molecule

Name:

aromatic compound_Ext -> aromatic compound

Description:

Transport of aromatic compound_Ext through a bacterial membrane, leading to the presence of aromatic compound inside the cell.

Type:

transport

Pathway Components:

aromatic compound_Ext - OmpF - PhoE -> aromatic compound

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	aromatic compound	simple_molecule
reactant	aromatic compound_Ext	simple_molecule

Name:

enterobactin_Ext -> enterobactin

Description:

Transport of enterobactin_Ext through a bacterial membrane, leading to the presence of enterobactin inside the cell.

Type:

transport

Pathway Components:

enterobactin_Ext - OmpF - PhoE -> enterobactin

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	enterobactin	simple_molecule
reactant	enterobactin_Ext	simple_molecule

Name:

trisaccharide_Ext -> trisaccharide

Description:

Transport of trisaccharide_Ext through a bacterial membrane, leading to the presence of trisaccharide inside the cell.

Type:

transport

Pathway Components:

trisaccharide_Ext - OmpF - PhoE -> trisaccharide

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	trisaccharide	simple_molecule
reactant	trisaccharide_Ext	simple_molecule

Name:

disaccharide_Ext -> disaccharide

Description:

Transport of disaccharide_Ext through a bacterial membrane, leading to the presence of disaccharide inside the cell.

Type:

transport

Pathway Components:

disaccharide_Ext - OmpF - PhoE -> disaccharide

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	disaccharide	simple_molecule
reactant	disaccharide_Ext	simple_molecule

Name:

maltose_Ext -> maltose

Description:

Transport of maltose_Ext through a bacterial membrane, leading to the presence of maltose inside the cell.

Type:

transport

Pathway Components:

maltose_Ext - OmpF - PhoE -> maltose

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	maltose	simple_molecule
reactant	maltose_Ext	simple_molecule

Name:

chitobiose_Ext -> chitobiose

Description:

Transport of chitobiose_Ext through a bacterial membrane, leading to the presence of chitobiose inside the cell.

Type:

transport

Pathway Components:

chitobiose_Ext - OmpF - PhoE -> chitobiose

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	chitobiose	simple_molecule
reactant	chitobiose_Ext	simple_molecule

Name:

oligopeptide_Ext -> oligopeptide

Description:

Transport of oligopeptide_Ext through a bacterial membrane, leading to the presence of oligopeptide inside the cell.

Type:

transport

Pathway Components:

oligopeptide_Ext - OmpF - PhoE -> oligopeptide

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	oligopeptide	simple_molecule
reactant	oligopeptide_Ext	simple_molecule

Name:

nucleoside_Ext -> nucleoside

Description:

Transport of nucleoside_Ext through a bacterial membrane, leading to the presence of nucleoside inside the cell.

Type:

transport

Pathway Components:

nucleoside_Ext - OmpF - PhoE -> nucleoside

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	nucleoside	simple_molecule
reactant	nucleoside_Ext	simple_molecule

Name:

nucleotide_Ext -> nucleotide

Description:

Transport of nucleotide_Ext through a bacterial membrane, leading to the presence of nucleotide inside the cell.

Type:

transport

Pathway Components:

nucleotide_Ext - OmpF - PhoE -> nucleotide

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	nucleotide	simple_molecule
reactant	nucleotide_Ext	simple_molecule

Name:

nucleotide sugar_Ext -> nucleotide sugar

Description:

Transport of nucleotide sugar_Ext through a bacterial membrane, leading to the presence of nucleotide sugar inside the cell.

Type:

transport

Pathway Components:

nucleotide sugar_Ext - OmpF - PhoE -> nucleotide sugar

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	nucleotide sugar	simple_molecule
reactant	nucleotide sugar_Ext	simple_molecule

Name:

RCHO_Ext -> RCHO

Description:

Transport of RCHO_Ext through a bacterial membrane, leading to the presence of RCHO inside the cell.

Type:

transport

Pathway Components:

RCHO_Ext - OmpF - PhoE -> RCHO

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	RCHO	simple_molecule
reactant	RCHO_Ext	simple_molecule

Name:

lactone_Ext -> lactone

Description:

Transport of lactone_Ext through a bacterial membrane, leading to the presence of lactone inside the cell.

Type:

transport

Pathway Components:

lactone_Ext - OmpF - PhoE -> lactone

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	lactone	simple_molecule
reactant	lactone_Ext	simple_molecule

Name:

amide_Ext -> amide

Description:

Transport of amide_Ext through a bacterial membrane, leading to the presence of amide inside the cell.

Type:

transport

Pathway Components:

amide_Ext - OmpF - PhoE -> amide

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	amide	simple_molecule
reactant	amide_Ext	simple_molecule

Name:

amine_Ext -> amine

Description:

Transport of amine_Ext through a bacterial membrane, leading to the presence of amine inside the cell.

Type:

transport

Pathway Components:

amine_Ext - OmpF - PhoE -> amine

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	amine	simple_molecule
reactant	amine_Ext	simple_molecule

Name:

hydroxy carboxylate_Ext -> hydroxy carboxylate

Description:

Transport of hydroxy carboxylate_Ext through a bacterial membrane, leading to the presence of hydroxy carboxylate inside the cell.

Type:

transport

Pathway Components:

hydroxy carboxylate_Ext - OmpF - PhoE -> hydroxy carboxylate

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	hydroxy carboxylate	simple_molecule
reactant	hydroxy carboxylate_Ext	simple_molecule

Name:

aldonate_Ext -> aldonate

Description:

Transport of aldonate_Ext through a bacterial membrane, leading to the presence of aldonate inside the cell.

Type:

transport

Pathway Components:

aldonate_Ext - OmpF - PhoE -> aldonate

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	aldonate	simple_molecule
reactant	aldonate_Ext	simple_molecule

Name:

MCFA_Ext -> MCFA

Description:

Transport of MCFA_Ext through a bacterial membrane, leading to the presence of MCFA inside the cell.

Type:

transport

Pathway Components:

MCFA_Ext - OmpF - PhoE -> MCFA

Components:

Function	Name	Type
product	MCFA	simple_molecule
reactant	MCFA_Ext	simple_molecule
catalyzer	OmpF	protein
catalyzer	PhoE	protein

Name:

caprate_Ext -> caprate

Description:

Transport of caprate_Ext through a bacterial membrane, leading to the presence of caprate inside the cell.

Type:

transport

Pathway Components:

caprate_Ext - OmpF - PhoE -> caprate

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	caprate	simple_molecule
reactant	caprate_Ext	simple_molecule

Name:

monocarboxylate_Ext -> monocarboxylate

Description:

Transport of monocarboxylate_Ext through a bacterial membrane, leading to the presence of monocarboxylate inside the cell.

Type:

transport

Pathway Components:

monocarboxylate_Ext - OmpF - PhoE -> monocarboxylate

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	monocarboxylate	simple_molecule
reactant	monocarboxylate_Ext	simple_molecule

Name:

betaine_Ext -> betaine

Description:

Transport of betaine_Ext through a bacterial membrane, leading to the presence of betaine inside the cell.

Type:

transport

Pathway Components:

betaine_Ext - OmpF - PhoE -> betaine

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	betaine	simple_molecule
reactant	betaine_Ext	simple_molecule

Name:

dicarboxylate_Ext -> dicarboxylate

Description:

Transport of dicarboxylate_Ext through a bacterial membrane, leading to the presence of dicarboxylate inside the cell.

Type:

transport

Pathway Components:

dicarboxylate_Ext - OmpF - PhoE -> dicarboxylate

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	dicarboxylate	simple_molecule
reactant	dicarboxylate_Ext	simple_molecule

Name:

5-methylthioribose_Ext -> 5-methylthioribose

Description:

Transport of 5-methylthioribose_Ext through a bacterial membrane, leading to the presence of 5-methylthioribose inside the cell.

Type:

transport

Pathway Components:

5-methylthioribose_Ext - OmpF - PhoE -> 5-methylthioribose

Components:

Function	Name	Type
product	5-methylthioribose	simple_molecule
reactant	5-methylthioribose_Ext	simple_molecule
catalyzer	OmpF	protein
catalyzer	PhoE	protein

Name:

inositol_Ext -> inositol

Description:

Transport of inositol_Ext through a bacterial membrane, leading to the presence of inositol inside the cell.

Type:

transport

Pathway Components:

inositol_Ext - OmpF - PhoE -> inositol

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	inositol	simple_molecule
reactant	inositol_Ext	simple_molecule

Name:

amino acid_Ext -> amino acid

Description:

Transport of amino acid_Ext through a bacterial membrane, leading to the presence of amino acid inside the cell.

Type:

transport

Pathway Components:

amino acid_Ext - OmpF - PhoE -> amino acid

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	amino acid	simple_molecule
reactant	amino acid_Ext	simple_molecule

Name:

base(2)_Ext -> base(2)

Description:

Transport of base(2)_Ext through a bacterial membrane, leading to the presence of base(2) inside the cell.

Type:

transport

Pathway Components:

base(2)_Ext - OmpF - PhoE -> base(2)

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	base(2)	simple_molecule
reactant	base(2)_Ext	simple_molecule

Name:

polyol_Ext -> polyol

Description:

Transport of polyol_Ext through a bacterial membrane, leading to the presence of polyol inside the cell.

Type:

transport

Pathway Components:

polyol_Ext - OmpF - PhoE -> polyol

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	polyol	simple_molecule
reactant	polyol_Ext	simple_molecule

Name:

short-chain alcohol_Ext -> short-chain alcohol

Description:

Transport of short-chain alcohol_Ext through a bacterial membrane, leading to the presence of short-chain alcohol inside the cell.

Type:

transport

Pathway Components:

short-chain alcohol_Ext - OmpF - PhoE -> short-chain alcohol

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	short-chain alcohol	simple_molecule
reactant	short-chain alcohol_Ext	simple_molecule

Name:

short-chain acid anion_Ext -> short-chain acid anion

Description:

Transport of short-chain acid anion_Ext through a bacterial membrane, leading to the presence of short-chain acid anion inside the cell.

Type:

transport

Pathway Components:

short-chain acid anion_Ext - OmpF - PhoE -> short-chain acid anion

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	short-chain acid anion	simple_molecule
reactant	short-chain acid anion_Ext	simple_molecule

Name:

organosulfur compound_Ext -> organosulfur compound

Description:

Transport of organosulfur compound_Ext through a bacterial membrane, leading to the presence of organosulfur compound inside the cell.

Type:

transport

Pathway Components:

organosulfur compound_Ext - OmpF - PhoE -> organosulfur compound

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	organosulfur compound	simple_molecule
reactant	organosulfur compound_Ext	simple_molecule

Name:

sulfadiazine_Ext -> sulfadiazine

Description:

Transport of sulfadiazine_Ext through a bacterial membrane, leading to the presence of sulfadiazine inside the cell.

Type:

transport

Pathway Components:

sulfadiazine_Ext - OmpF - PhoE -> sulfadiazine

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	sulfadiazine	simple_molecule
reactant	sulfadiazine_Ext	simple_molecule

Name:

ion_Ext -> ion

Description:

Transport of ion_Ext through a bacterial membrane, leading to the presence of ion inside the cell.

Type:

transport

Pathway Components:

ion_Ext - OmpF - PhoE -> ion

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	ion	simple_molecule
reactant	ion_Ext	simple_molecule

Name:

glycerol 1-phosphate_Ext -> glycerol 1-phosphate

Description:

Transport of glycerol 1-phosphate_Ext through a bacterial membrane, leading to the presence of glycerol 1-phosphate inside the cell.

Type:

transport

Pathway Components:

glycerol 1-phosphate_Ext - OmpF - PhoE -> glycerol 1-phosphate

Components:

Function	Name	Type
catalyzer	OmpF	protein
catalyzer	PhoE	protein
product	glycerol 1-phosphate	simple_molecule
reactant	glycerol 1-phosphate_Ext	simple_molecule

Name:

TolB + OmpF -> TolB-OmpF

Description:

Reaction transforming TolB, OmpF into TolB-OmpF

Type:

state transition

Pathway Components:

TolB + OmpF -> TolB-OmpF

Components:

Function	Name	Type
reactant	OmpF	protein
reactant	TolB	protein
product	TolB-OmpF	complex

Name:

gadX_mRNA -> GadX

Description:

Translation of GadX

Type:

translation

Pathway Components:

gadX_mRNA -> GadX

Components:

Function	Name	Type
product	GadX	protein
reactant	gadX_mRNA	RNA

Name:

yhjC_mRNA -> YhjC

Description:

Translation of YhjC

Type:

translation

Pathway Components:

yhjC_mRNA -> YhjC

Components:

Function	Name	Type
product	YhjC	protein
reactant	yhjC_mRNA	RNA

Name:

phoE_mRNA -> PhoE

Description:

Translation of PhoE

Type:

translation

Pathway Components:

phoE_mRNA -> PhoE

Components:

Function	Name	Type
product	PhoE	protein
reactant	phoE_mRNA	RNA

Name:

pstSCAB-phoU_mRNA -> PstS

Description:

Translation of PstS

Type:

translation

Pathway Components:

pstSCAB-phoU_mRNA -> PstS

Components:

Function	Name	Type
product	PstS	protein
reactant	pstSCAB-phoU_mRNA	RNA

Name:

pstSCAB-phoU_mRNA -> PstC

Description:

Translation of PstC

Type:

translation

Pathway Components:

pstSCAB-phoU_mRNA -> PstC

Components:

Function	Name	Type
product	PstC	protein
reactant	pstSCAB-phoU_mRNA	RNA

Name:

pstSCAB-phoU_mRNA -> PstA

Description:

Translation of PstA

Type:

translation

Pathway Components:

pstSCAB-phoU_mRNA -> PstA

Components:

Function	Name	Type
product	PstA	protein
reactant	pstSCAB-phoU_mRNA	RNA

Name:

pstSCAB-phoU_mRNA -> PstB

Description:

Translation of PstB

Type:

translation

Pathway Components:

pstSCAB-phoU_mRNA -> PstB

Components:

Function	Name	Type
product	PstB	protein
reactant	pstSCAB-phoU_mRNA	RNA

Name:

pstSCAB-phoU_mRNA -> PhoU

Description:

Translation of PhoU

Type:

translation

Pathway Components:

pstSCAB-phoU_mRNA -> PhoU

Components:

Function	Name	Type
product	PhoU	protein
reactant	pstSCAB-phoU_mRNA	RNA

Name:

psiE_mRNA -> PsiE

Description:

Translation of PsiE

Type:

translation

Pathway Components:

psiE_mRNA -> PsiE

Components:

Function	Name	Type
product	PsiE	protein
reactant	psiE_mRNA	RNA

Name:

phoA-psiF_mRNA -> PhoA

Description:

Translation of PhoA

Type:

translation

Pathway Components:

phoA-psiF_mRNA -> PhoA

Components:

Function	Name	Type
product	PhoA	protein
reactant	phoA-psiF_mRNA	RNA

Name:

phosphate monoester -> phosphate + alcohol

Description:

Reaction transforming phosphate monoester into phosphate, alcohol

Type:

state transition

Pathway Components:

phosphate monoester - PhoA - arsenate -> phosphate + alcohol

Components:

Function	Name	Type
catalyzer	PhoA	protein
product	alcohol	simple_molecule
inhibitor	arsenate	simple_molecule
product	phosphate	simple_molecule
reactant	phosphate monoester	simple_molecule

Name:

phosphoethanolamine -> phosphate + colamine

Description:

Reaction transforming phosphoethanolamine into phosphate, colamine

Type:

state transition

Pathway Components:

phosphoethanolamine - PhoA -> phosphate + colamine

Components:

Function	Name	Type
catalyzer	PhoA	protein
product	colamine	simple_molecule
product	phosphate	simple_molecule
reactant	phosphoethanolamine	simple_molecule

Name:

phosphocholine -> phosphate + choline

Description:

Reaction transforming phosphocholine into phosphate, choline

Type:

state transition

Pathway Components:

phosphocholine - PhoA -> phosphate + choline

Components:

Function	Name	Type
catalyzer	PhoA	protein
product	choline	simple_molecule
product	phosphate	simple_molecule
reactant	phosphocholine	simple_molecule

Name:

phosphocysteamine -> cysteamine + phosphate

Description:

Reaction transforming phosphocysteamine into cysteamine, phosphate

Type:

state transition

Pathway Components:

phosphocysteamine - PhoA -> cysteamine + phosphate

Components:

Function	Name	Type
catalyzer	PhoA	protein
product	cysteamine	simple_molecule
product	phosphate	simple_molecule
reactant	phosphocysteamine	simple_molecule

Name:

pNPP -> phosphate + niphen

Description:

Reaction transforming pNPP into phosphate, niphen

Type:

state transition

Pathway Components:

pNPP - PhoA -> phosphate + niphen

Components:

Function	Name	Type
catalyzer	PhoA	protein
product	niphen	simple_molecule
reactant	pNPP	simple_molecule
product	phosphate	simple_molecule

Name:

vitamin B6 -> phosphate + pyridoxal

Description:

Reaction transforming vitamin B6 into phosphate, pyridoxal

Type:

state transition

Pathway Components:

vitamin B6 - PhoA -> phosphate + pyridoxal

Components:

Function	Name	Type
catalyzer	PhoA	protein
product	phosphate	simple_molecule
product	pyridoxal	simple_molecule
reactant	vitamin B6	simple_molecule

Name:

pyridoxine-P -> pyridoxol + phosphate

Description:

Reaction transforming pyridoxine-P into pyridoxol, phosphate

Type:

state transition

Pathway Components:

pyridoxine-P - PhoA -> pyridoxol + phosphate

Components:

Function	Name	Type
catalyzer	PhoA	protein
product	phosphate	simple_molecule
reactant	pyridoxine-P	simple_molecule
product	pyridoxol	simple_molecule

Name:

5'-IMP -> phosphate + inosine

Description:

Reaction transforming 5'-IMP into phosphate, inosine

Type:

state transition

Pathway Components:

5'-IMP - PhoA -> phosphate + inosine

Components:

Function	Name	Type
reactant	5'-IMP	simple_molecule
catalyzer	PhoA	protein
product	inosine	simple_molecule
product	phosphate	simple_molecule

Name:

5'-UMP -> phosphate + uridine

Description:

Reaction transforming 5'-UMP into phosphate, uridine

Type:

state transition

Pathway Components:

5'-UMP - PhoA -> phosphate + uridine

Components:

Function	Name	Type
reactant	5'-UMP	simple_molecule
catalyzer	PhoA	protein
product	phosphate	simple_molecule
product	uridine	simple_molecule

Name:

3'-UMP -> phosphate + uridine

Description:

Reaction transforming 3'-UMP into phosphate, uridine

Type:

state transition

Pathway Components:

3'-UMP - PhoA -> phosphate + uridine

Components:

Function	Name	Type
reactant	3'-UMP	simple_molecule
catalyzer	PhoA	protein
product	phosphate	simple_molecule
product	uridine	simple_molecule

Name:

2'-UMP -> phosphate + uridine

Description:

Reaction transforming 2'-UMP into phosphate, uridine

Type:

state transition

Pathway Components:

2'-UMP - PhoA -> phosphate + uridine

Components:

Function	Name	Type
reactant	2'-UMP	simple_molecule
catalyzer	PhoA	protein
product	phosphate	simple_molecule
product	uridine	simple_molecule

Name:

dCMP -> d-cytidine + phosphate

Description:

Reaction transforming dCMP into d-cytidine, phosphate

Type:

state transition

Pathway Components:

dCMP - PhoA -> d-cytidine + phosphate

Components:

Function	Name	Type
catalyzer	PhoA	protein
product	d-cytidine	simple_molecule
reactant	dCMP	simple_molecule
product	phosphate	simple_molecule

Name:

cytidylate -> phosphate + cytidine

Description:

Reaction transforming cytidylate into phosphate, cytidine

Type:

state transition

Pathway Components:

cytidylate - PhoA -> phosphate + cytidine

Components:

Function	Name	Type
catalyzer	PhoA	protein
product	cytidine	simple_molecule
reactant	cytidylate	simple_molecule
product	phosphate	simple_molecule

Name:

3'-CMP -> phosphate + cytidine

Description:

Reaction transforming 3'-CMP into phosphate, cytidine

Type:

state transition

Pathway Components:

3'-CMP - PhoA -> phosphate + cytidine

Components:

Function	Name	Type
reactant	3'-CMP	simple_molecule
catalyzer	PhoA	protein
product	cytidine	simple_molecule
product	phosphate	simple_molecule

Name:

2'CMP -> phosphate + cytidine

Description:

Reaction transforming 2'CMP into phosphate, cytidine

Type:

state transition

Pathway Components:

2'CMP - PhoA -> phosphate + cytidine

Components:

Function	Name	Type
reactant	2'CMP	simple_molecule
catalyzer	PhoA	protein
product	cytidine	simple_molecule
product	phosphate	simple_molecule

Name:

guanosine 2'-monophosphate -> phosphate + guanosine

Description:

Reaction transforming guanosine 2'-monophosphate into phosphate, guanosine

Type:

state transition

Pathway Components:

guanosine 2'-monophosphate - PhoA -> phosphate + guanosine

Components:

Function	Name	Type
catalyzer	PhoA	protein
product	guanosine	simple_molecule
reactant	guanosine 2'-monophosphate	simple_molecule
product	phosphate	simple_molecule

Name:

dGMP -> deoxyguanosine + phosphate

Description:

Reaction transforming dGMP into deoxyguanosine, phosphate

Type:

state transition

Pathway Components:

dGMP - PhoA -> deoxyguanosine + phosphate

Components:

Function	Name	Type
catalyzer	PhoA	protein
reactant	dGMP	simple_molecule
product	deoxyguanosine	simple_molecule
product	phosphate	simple_molecule

Name:

2'-AMP -> phosphate + adenosine

Description:

Reaction transforming 2'-AMP into phosphate, adenosine

Type:

state transition

Pathway Components:

2'-AMP - PhoA -> phosphate + adenosine

Components:

Function	Name	Type
reactant	2'-AMP	simple_molecule
catalyzer	PhoA	protein
product	adenosine	simple_molecule
product	phosphate	simple_molecule

Name:

3'-AMP -> adenosine + phosphate

Description:

Reaction transforming 3'-AMP into adenosine, phosphate

Type:

state transition

Pathway Components:

3'-AMP - PhoA -> adenosine + phosphate

Components:

Function	Name	Type
reactant	3'-AMP	simple_molecule
catalyzer	PhoA	protein
product	adenosine	simple_molecule
product	phosphate	simple_molecule

Name:

dAMP -> deoxyadenosine + phosphate

Description:

Reaction transforming dAMP into deoxyadenosine, phosphate

Type:

state transition

Pathway Components:

dAMP - PhoA -> deoxyadenosine + phosphate

Components:

Function	Name	Type
catalyzer	PhoA	protein
reactant	dAMP	simple_molecule
product	deoxyadenosine	simple_molecule
product	phosphate	simple_molecule

Name:

P-enol-pyruvate -> phosphate + pyruvate

Description:

Reaction transforming P-enol-pyruvate into phosphate, pyruvate

Type:

state transition

Pathway Components:

P-enol-pyruvate - PhoA -> phosphate + pyruvate

Components:

Function	Name	Type
reactant	P-enol-pyruvate	simple_molecule
catalyzer	PhoA	protein
product	phosphate	simple_molecule
product	pyruvate	simple_molecule

Name:

histidinol-P -> phosphate + histidol

Description:

Reaction transforming histidinol-P into phosphate, histidol

Type:

state transition

Pathway Components:

histidinol-P - PhoA - histidol -> phosphate + histidol

Components:

Function	Name	Type
catalyzer	PhoA	protein
reactant	histidinol-P	simple_molecule
inhibitor	histidol	simple_molecule
product	histidol	simple_molecule
product	phosphate	simple_molecule

Name:

flavin mononucleotide -> riboflavin + phosphate

Description:

Reaction transforming flavin mononucleotide into riboflavin, phosphate

Type:

state transition

Pathway Components:

flavin mononucleotide - PhoA -> riboflavin + phosphate

Components:

Function	Name	Type
catalyzer	PhoA	protein
reactant	flavin mononucleotide	simple_molecule
product	phosphate	simple_molecule
product	riboflavin	simple_molecule

Name:

fructose 1,6-biphosphate -> fructose-6-P + phosphate

Description:

Reaction transforming fructose 1,6-biphosphate into fructose-6-P, phosphate

Type:

state transition

Pathway Components:

fructose 1,6-biphosphate - PhoA - P-enol-pyruvate - beta-D-glucose-6-P -> fructose-6-P + phosphate

Components:

Function	Name	Type
inhibitor	P-enol-pyruvate	simple_molecule
catalyzer	PhoA	protein
inhibitor	beta-D-glucose-6-P	simple_molecule
reactant	fructose 1,6-biphosphate	simple_molecule
product	fructose-6-P	simple_molecule
product	phosphate	simple_molecule

Name:

2-P-D-glycerate -> glycerate + phosphate

Description:

Reaction transforming 2-P-D-glycerate into glycerate, phosphate

Type:

state transition

Pathway Components:

2-P-D-glycerate - PhoA -> glycerate + phosphate

Components:

Function	Name	Type
reactant	2-P-D-glycerate	simple_molecule
catalyzer	PhoA	protein
product	glycerate	simple_molecule
product	phosphate	simple_molecule

Name:

2-glycerophosphate -> phosphate + glycerol

Description:

Reaction transforming 2-glycerophosphate into phosphate, glycerol

Type:

state transition

Pathway Components:

2-glycerophosphate - PhoA -> phosphate + glycerol

Components:

Function	Name	Type
reactant	2-glycerophosphate	simple_molecule
catalyzer	PhoA	protein
product	glycerol	simple_molecule
product	phosphate	simple_molecule

Name:

ribose-5P -> aldehydo-D-ribose + phosphate

Description:

Reaction transforming ribose-5P into aldehydo-D-ribose, phosphate

Type:

state transition

Pathway Components:

ribose-5P - PhoA -> aldehydo-D-ribose + phosphate

Components:

Function	Name	Type
catalyzer	PhoA	protein
product	aldehydo-D-ribose	simple_molecule
product	phosphate	simple_molecule
reactant	ribose-5P	simple_molecule

Name:

phosphothreonine -> threonine + phosphate

Description:

Reaction transforming phosphothreonine into threonine, phosphate

Type:

state transition

Pathway Components:

phosphothreonine - PhoA -> threonine + phosphate

Components:

Function	Name	Type
catalyzer	PhoA	protein
product	phosphate	simple_molecule
reactant	phosphothreonine	simple_molecule
product	threonine	simple_molecule

Name:

serine-3P -> phosphate + serine

Description:

Reaction transforming serine-3P into phosphate, serine

Type:

state transition

Pathway Components:

serine-3P - PhoA - serine -> phosphate + serine

Components:

Function	Name	Type
catalyzer	PhoA	protein
product	phosphate	simple_molecule
inhibitor	serine	simple_molecule
product	serine	simple_molecule
reactant	serine-3P	simple_molecule

Name:

P3,i -> diphosphate + phosphate

Description:

Reaction transforming P3,i into diphosphate, phosphate

Type:

state transition

Pathway Components:

P3,i - PhoA -> diphosphate + phosphate

Components:

Function	Name	Type
reactant	P3,i	simple_molecule
catalyzer	PhoA	protein
product	diphosphate	simple_molecule
product	phosphate	simple_molecule

Name:

diphosphate -> phosphate

Description:

Reaction transforming diphosphate into phosphate

Type:

state transition

Pathway Components:

diphosphate - PhoA -> phosphate

Components:

Function	Name	Type
catalyzer	PhoA	protein
reactant	diphosphate	simple_molecule
product	phosphate	simple_molecule

Name:

glucose 1-phosphate -> glucopyranose + phosphate

Description:

Reaction transforming glucose 1-phosphate into glucopyranose, phosphate

Type:

state transition

Pathway Components:

glucose 1-phosphate - PhoA -> glucopyranose + phosphate

Components:

Function	Name	Type
catalyzer	PhoA	protein
product	glucopyranose	simple_molecule
reactant	glucose 1-phosphate	simple_molecule
product	phosphate	simple_molecule

Name:

glucose-6-P -> glucopyranose + phosphate

Description:

Reaction transforming glucose-6-P into glucopyranose, phosphate

Type:

state transition

Pathway Components:

glucose-6-P - PhoA -> glucopyranose + phosphate

Components:

Function	Name	Type
catalyzer	PhoA	protein
product	glucopyranose	simple_molecule
reactant	glucose-6-P	simple_molecule
product	phosphate	simple_molecule

Name:

sugar phosphate -> phosphate + sugar

Description:

Reaction transforming sugar phosphate into phosphate, sugar

Type:

state transition

Pathway Components:

sugar phosphate - PhoA -> phosphate + sugar

Components:

Function	Name	Type
catalyzer	PhoA	protein
product	phosphate	simple_molecule
product	sugar	simple_molecule
reactant	sugar phosphate	simple_molecule

Name:

mannitol-1-P -> phosphate + mannitol

Description:

Reaction transforming mannitol-1-P into phosphate, mannitol

Type:

state transition

Pathway Components:

mannitol-1-P - PhoA -> phosphate + mannitol

Components:

Function	Name	Type
catalyzer	PhoA	protein
product	mannitol	simple_molecule
reactant	mannitol-1-P	simple_molecule
product	phosphate	simple_molecule

Name:

sorbitol 6-phosphate -> phosphate + gulitol

Description:

Reaction transforming sorbitol 6-phosphate into phosphate, gulitol

Type:

state transition

Pathway Components:

sorbitol 6-phosphate - PhoA -> phosphate + gulitol

Components:

Function	Name	Type
catalyzer	PhoA	protein
product	gulitol	simple_molecule
product	phosphate	simple_molecule
reactant	sorbitol 6-phosphate	simple_molecule

Name:

hexose phosphate -> phosphate + hexose

Description:

Reaction transforming hexose phosphate into phosphate, hexose

Type:

state transition

Pathway Components:

hexose phosphate - PhoA -> phosphate + hexose

Components:

Function	Name	Type
catalyzer	PhoA	protein
product	hexose	simple_molecule
reactant	hexose phosphate	simple_molecule
product	phosphate	simple_molecule

Name:

D-glucose 1-phosphate -> glucopyranose + phosphate

Description:

Reaction transforming D-glucose 1-phosphate into glucopyranose, phosphate

Type:

state transition

Pathway Components:

D-glucose 1-phosphate - PhoA -> glucopyranose + phosphate

Components:

Function	Name	Type
reactant	D-glucose 1-phosphate	simple_molecule
catalyzer	PhoA	protein
product	glucopyranose	simple_molecule
product	phosphate	simple_molecule

Name:

α-D-glucose-6-P -> α-glucose + phosphate

Description:

Reaction transforming α-D-glucose-6-P into α-glucose, phosphate

Type:

state transition

Pathway Components:

α-D-glucose-6-P - PhoA -> α-glucose + phosphate

Components:

Function	Name	Type
reactant	α-D-glucose-6-P	simple_molecule
product	α-glucose	simple_molecule
catalyzer	PhoA	protein
product	phosphate	simple_molecule

Name:

beta-D-glucose-6-P -> beta-glucose + phosphate

Description:

Reaction transforming beta-D-glucose-6-P into beta-glucose, phosphate

Type:

state transition

Pathway Components:

beta-D-glucose-6-P - PhoA -> beta-glucose + phosphate

Components:

Function	Name	Type
catalyzer	PhoA	protein
reactant	beta-D-glucose-6-P	simple_molecule
product	beta-glucose	simple_molecule
product	phosphate	simple_molecule

Name:

beta-D-fructofuranose-1-P -> beta-Levulose + phosphate

Description:

Reaction transforming beta-D-fructofuranose-1-P into beta-Levulose, phosphate

Type:

state transition

Pathway Components:

beta-D-fructofuranose-1-P - PhoA -> beta-Levulose + phosphate

Components:

Function	Name	Type
catalyzer	PhoA	protein
reactant	beta-D-fructofuranose-1-P	simple_molecule
product	beta-Levulose	simple_molecule
product	phosphate	simple_molecule

Name:

mannose-6-P -> phosphate + mannose

Description:

Reaction transforming mannose-6-P into phosphate, mannose

Type:

state transition

Pathway Components:

mannose-6-P - PhoA -> phosphate + mannose

Components:

Function	Name	Type
catalyzer	PhoA	protein
product	mannose	simple_molecule
reactant	mannose-6-P	simple_molecule
product	phosphate	simple_molecule

Name:

mannose-1-P -> phosphate + mannose

Description:

Reaction transforming mannose-1-P into phosphate, mannose

Type:

state transition

Pathway Components:

mannose-1-P - PhoA -> phosphate + mannose

Components:

Function	Name	Type
catalyzer	PhoA	protein
product	mannose	simple_molecule
reactant	mannose-1-P	simple_molecule
product	phosphate	simple_molecule

Name:

α-D-glucosamine phosphate -> chitosamine + phosphate

Description:

Reaction transforming α-D-glucosamine phosphate into chitosamine, phosphate

Type:

state transition

Pathway Components:

α-D-glucosamine phosphate - PhoA -> chitosamine + phosphate

Components:

Function	Name	Type
reactant	α-D-glucosamine phosphate	simple_molecule
catalyzer	PhoA	protein
product	chitosamine	simple_molecule
product	phosphate	simple_molecule

Name:

3-P-D-glycerate -> phosphate + glycerate

Description:

Reaction transforming 3-P-D-glycerate into phosphate, glycerate

Type:

state transition

Pathway Components:

3-P-D-glycerate - PhoA -> phosphate + glycerate

Components:

Function	Name	Type
reactant	3-P-D-glycerate	simple_molecule
catalyzer	PhoA	protein
product	glycerate	simple_molecule
product	phosphate	simple_molecule

Name:

2-P-glycolate -> glycolate + phosphate

Description:

Reaction transforming 2-P-glycolate into glycolate, phosphate

Type:

state transition

Pathway Components:

2-P-glycolate - PhoA -> glycolate + phosphate

Components:

Function	Name	Type
reactant	2-P-glycolate	simple_molecule
catalyzer	PhoA	protein
product	glycolate	simple_molecule
product	phosphate	simple_molecule

Name:

2-deoxy-D-glucose 6-phosphate -> 2-deoxyglucose + phosphate

Description:

Reaction transforming 2-deoxy-D-glucose 6-phosphate into 2-deoxyglucose, phosphate

Type:

state transition

Pathway Components:

2-deoxy-D-glucose 6-phosphate - PhoA -> 2-deoxyglucose + phosphate

Components:

Function	Name	Type
reactant	2-deoxy-D-glucose 6-phosphate	simple_molecule
product	2-deoxyglucose	simple_molecule
catalyzer	PhoA	protein
product	phosphate	simple_molecule

Name:

neo-ton -> phosphate + creatine

Description:

Reaction transforming neo-ton into phosphate, creatine

Type:

state transition

Pathway Components:

neo-ton - PhoA -> phosphate + creatine

Components:

Function	Name	Type
catalyzer	PhoA	protein
product	creatine	simple_molecule
reactant	neo-ton	simple_molecule
product	phosphate	simple_molecule

Name:

6-p gluconate -> gluconate + phosphate

Description:

Reaction transforming 6-p gluconate into gluconate, phosphate

Type:

state transition

Pathway Components:

6-p gluconate - PhoA -> gluconate + phosphate

Components:

Function	Name	Type
reactant	6-p gluconate	simple_molecule
catalyzer	PhoA	protein
product	gluconate	simple_molecule
product	phosphate	simple_molecule

Name:

DHAP -> glycerone + phosphate

Description:

Reaction transforming DHAP into glycerone, phosphate

Type:

state transition

Pathway Components:

DHAP - PhoA -> glycerone + phosphate

Components:

Function	Name	Type
reactant	DHAP	simple_molecule
catalyzer	PhoA	protein
product	glycerone	simple_molecule
product	phosphate	simple_molecule

Name:

glyceraldehyde-P -> glycerose + phosphate

Description:

Reaction transforming glyceraldehyde-P into glycerose, phosphate

Type:

state transition

Pathway Components:

glyceraldehyde-P - PhoA -> glycerose + phosphate

Components:

Function	Name	Type
catalyzer	PhoA	protein
reactant	glyceraldehyde-P	simple_molecule
product	glycerose	simple_molecule
product	phosphate	simple_molecule

Name:

GAP -> glycerose + phosphate

Description:

Reaction transforming GAP into glycerose, phosphate

Type:

state transition

Pathway Components:

GAP - PhoA -> glycerose + phosphate

Components:

Function	Name	Type
reactant	GAP	simple_molecule
catalyzer	PhoA	protein
product	glycerose	simple_molecule
product	phosphate	simple_molecule

Name:

phoA-psiF_mRNA -> PsiF

Description:

Translation of PsiF

Type:

translation

Pathway Components:

phoA-psiF_mRNA -> PsiF

Components:

Function	Name	Type
product	PsiF	protein
reactant	phoA-psiF_mRNA	RNA

Name:

mipA_mRNA -> MipA

Description:

Translation of MipA

Type:

translation

Pathway Components:

mipA_mRNA -> MipA

Components:

Function	Name	Type
product	MipA	protein
reactant	mipA_mRNA	RNA

Name:

phoU_mRNA -> PhoU

Description:

Translation of PhoU

Type:

translation

Pathway Components:

phoU_mRNA -> PhoU

Components:

Function	Name	Type
product	PhoU	protein
reactant	phoU_mRNA	RNA

Name:

cusCFBA_mRNA -> CusC

Description:

Translation of CusC

Type:

translation

Pathway Components:

cusCFBA_mRNA -> CusC

Components:

Function	Name	Type
product	CusC	protein
reactant	cusCFBA_mRNA	RNA

Name:

CusA + CusC + CusF + CusB -> CusC-CusB-CusF-CusA

Description:

Reaction transforming CusA, CusC, CusF, CusB into CusC-CusB-CusF-CusA

Type:

state transition

Pathway Components:

CusA + CusC + CusF + CusB -> CusC-CusB-CusF-CusA

Components:

Function	Name	Type
reactant	CusA	protein
reactant	CusB	protein
reactant	CusC	protein
product	CusC-CusB-CusF-CusA	complex
reactant	CusF	protein

Name:

Cu(I)_Ext -> Cu(I)

Description:

Transport of Cu(I)_Ext through a bacterial membrane, leading to the presence of Cu(I) inside the cell.

Type:

transport

Pathway Components:

Cu(I)_Ext - CusC-CusB-CusF-CusA -> Cu(I)

Components:

Function	Name	Type
product	Cu(I)	simple_molecule
reactant	Cu(I)_Ext	simple_molecule
catalyzer	CusC-CusB-CusF-CusA	complex

Name:

silver_Ext -> silver

Description:

Transport of silver_Ext through a bacterial membrane, leading to the presence of silver inside the cell.

Type:

transport

Pathway Components:

silver_Ext - CusC-CusB-CusF-CusA -> silver

Components:

Function	Name	Type
catalyzer	CusC-CusB-CusF-CusA	complex
product	silver	simple_molecule
reactant	silver_Ext	simple_molecule

Name:

cusCFBA_mRNA -> CusF

Description:

Translation of CusF

Type:

translation

Pathway Components:

cusCFBA_mRNA -> CusF

Components:

Function	Name	Type
product	CusF	protein
reactant	cusCFBA_mRNA	RNA

Name:

cusCFBA_mRNA -> CusB

Description:

Translation of CusB

Type:

translation

Pathway Components:

cusCFBA_mRNA -> CusB

Components:

Function	Name	Type
product	CusB	protein
reactant	cusCFBA_mRNA	RNA

Name:

cusCFBA_mRNA -> CusA

Description:

Translation of CusA

Type:

translation

Pathway Components:

cusCFBA_mRNA -> CusA

Components:

Function	Name	Type
product	CusA	protein
reactant	cusCFBA_mRNA	RNA

Name:

yedX_mRNA -> YedX

Description:

Translation of YedX

Type:

translation

Pathway Components:

yedX_mRNA -> YedX

Components:

Function	Name	Type
product	YedX	protein
reactant	yedX_mRNA	RNA

Name:

(S)-5-hydroxyisourate -> (S)-OHCU

Description:

Reaction transforming (S)-5-hydroxyisourate into (S)-OHCU

Type:

state transition

Pathway Components:

(S)-5-hydroxyisourate - YedX -> (S)-OHCU

Components:

Function	Name	Type
reactant	(S)-5-hydroxyisourate	simple_molecule
product	(S)-OHCU	simple_molecule
catalyzer	YedX	protein

Name:

prpR_mRNA -> PrpR

Description:

Translation of PrpR

Type:

translation

Pathway Components:

prpR_mRNA -> PrpR

Components:

Function	Name	Type
product	PrpR	protein
reactant	prpR_mRNA	RNA

Name:

phoBR_mRNA -> PhoB

Description:

Translation of PhoB

Type:

translation

Pathway Components:

phoBR_mRNA -> PhoB

Components:

Function	Name	Type
product	PhoB	protein
reactant	phoBR_mRNA	RNA

Name:

phoBR_mRNA -> PhoT

Description:

Translation of PhoT

Type:

translation

Pathway Components:

phoBR_mRNA -> PhoT

Components:

Function	Name	Type
product	PhoT	protein
reactant	phoBR_mRNA	RNA

Name:

phoBR_mRNA -> PhoR

Description:

Translation of PhoR

Type:

translation

Pathway Components:

phoBR_mRNA -> PhoR

Components:

Function	Name	Type
product	PhoR	protein
reactant	phoBR_mRNA	RNA

Name:

tktB_mRNA -> TktB

Description:

Translation of TktB

Type:

translation

Pathway Components:

tktB_mRNA -> TktB

Components:

Function	Name	Type
product	TktB	protein
reactant	tktB_mRNA	RNA

Name:

sedoheptulose-7-P + glyceraldehyde-P -> xylulose-P + ribose-5P

Description:

Reaction transforming sedoheptulose-7-P, glyceraldehyde-P into xylulose-P, ribose-5P

Type:

state transition

Pathway Components:

sedoheptulose-7-P + glyceraldehyde-P - TktB -> xylulose-P + ribose-5P

Components:

Function	Name	Type
catalyzer	TktB	protein
reactant	glyceraldehyde-P	simple_molecule
product	ribose-5P	simple_molecule
reactant	sedoheptulose-7-P	simple_molecule
product	xylulose-P	simple_molecule

Name:

erythrose-4P + xylulose-P -> glyceraldehyde-P + fructose-6-P

Description:

Reaction transforming erythrose-4P, xylulose-P into glyceraldehyde-P, fructose-6-P

Type:

state transition

Pathway Components:

erythrose-4P + xylulose-P - TktB -> glyceraldehyde-P + fructose-6-P

Components:

Function	Name	Type
catalyzer	TktB	protein
reactant	erythrose-4P	simple_molecule
product	fructose-6-P	simple_molecule
product	glyceraldehyde-P	simple_molecule
reactant	xylulose-P	simple_molecule

Name:

phoQ_mRNA -> PhoQ

Description:

Translation of PhoQ

Type:

translation

Pathway Components:

phoQ_mRNA -> PhoQ

Components:

Function	Name	Type
product	PhoQ	protein
reactant	phoQ_mRNA	RNA

Name:

PRPP -> histidinol-P

Description:

Transformation of PRPP into histidinol-P by one or more reactions not shown.

Type:

complementary pathway reaction

Pathway Components:

PRPP / ATPPHOSPHORIBOSYLTRANS-RXN / HISTPRATPHYD-RXN / HISTCYCLOHYD-RXN / PRIBFAICARPISOM-RXN / GLUTAMIDOTRANS-RXN / IMIDPHOSDEHYD-RXN / HISTAMINOTRANS-RXN / histidinol-P

Components:

Function	Name	Type
reactant	PRPP	simple_molecule
product	histidinol-P	simple_molecule

Name:

sedoheptulose-7-P + glyceraldehyde-P -> erythrose-4P + fructose-6-P + glyceraldehyde-P

Description:

Transformation of sedoheptulose-7-P, glyceraldehyde-P into erythrose-4P, fructose-6-P , glyceraldehyde-P by one or more reactions not shown.

Type:

complementary pathway reaction

Pathway Components:

sedoheptulose-7-P / TRANSALDOL-RXN / glyceraldehyde-P

Components:

Function	Name	Type
product	erythrose-4P	simple_molecule
product	fructose-6-P	simple_molecule
product	glyceraldehyde-P	simple_molecule
reactant	glyceraldehyde-P	simple_molecule
reactant	sedoheptulose-7-P	simple_molecule

Gensor Unit Map