RegulonDB RegulonDB 11.2: Operon Form
   

yeiL operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: yeiL
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: yeiL
Gene(s): yeiL   Genome Browser M3D Gene expression COLOMBOS
Reference(s): [1] Anjum MF., et al., 2000
Promoter
Name: yeiLp
+1: 2255290
Sigma Factor: Sigma38 Sigmulon
Distance from start of the gene: 65
Sequence: aaagaaaattcgaccgggccgatgattgaatcttaacaacagcgtacgtatgctaaatatGagaaatctcatagcggataa
                                 -35             -10        +1                   
Evidence: [COMP-AINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
[COMP-HINF-SIMILAR-TO-CONSENSUS]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
Reference(s): [1] Anjum MF., et al., 2000
[2] Huerta AM., et al., 2003
TF binding sites (TFBSs)
[FNR,-] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal FNR repressor yeiLp 2255255 2255268 -28.5 gggccgatgaTTGAATCTTAACAAcagcgtacgt nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] W [1]
[IHF,+] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote IHF activator yeiLp 2255057 2255069 -227.0 aatgttttatCAAGCGTCTGATTacccgctaca nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] W [1]
remote IHF activator yeiLp 2255091 2255103 -193.0 tagtgatgccTAATAAATCTATTgccggatgtt nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] W [1]
[Lrp,+] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote Lrp-L-leucine activator yeiLp 2255164 2255175 -120.0 atcacaatccAGAATAATTTTTctcttttcca nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] W [1]
[YeiL,+] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd YeiL activator yeiLp nd nd nd nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS] W [3]


Transcription unit       
Name: yeiL
Gene(s): yeiL   Genome Browser M3D Gene expression COLOMBOS
Evidence: [COMP-HINF] Inferred by a human based on computational evidence


Evidence    

 [COMP-AINF] Inferred computationally without human oversight

 [COMP-HINF-POSITIONAL-IDENTIFICATION] Human inference of promoter position

 [COMP-HINF-SIMILAR-TO-CONSENSUS] A person inferred or reviewed a computer inference of sequence function based on similarity to a consensus sequence.

 [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] Transcription initiation mapping

 [EXP-IEP-GENE-EXPRESSION-ANALYSIS] Gene expression analysis


Reference(s)    

 [1] Anjum MF., Green J., Guest JR., 2000, YeiL, the third member of the CRP-FNR family in Escherichia coli., Microbiology 146 Pt 12:3157-70

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [3] Wehland M., Bernhard F., 2000, The RcsAB box. Characterization of a new operator essential for the regulation of exopolysaccharide biosynthesis in enteric bacteria., J Biol Chem 275(10):7013-20

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