|
CsgD |
activator |
adrAp
|
Sigma38 |
-65.5
|
-81.5
|
dgcC
|
ctgatagtgcTAACGGGTGAGCTACgaaaatggct
ctgatagtgcTAACGGGTGAGCTAcgaaaatggc
|
403615
|
403629
|
[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]
|
C
|
[1], [1], [2], [2]
|
|
CsgD |
activator |
adrAp
|
Sigma38 |
-47.0
|
-63.0
|
dgcC
|
gctacgaaaaTGGCTCACCCGaaatatcata
tatgatatttCGGGTGAGCCAttttcgtagc
|
403635
|
403645
|
[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IMP-SITE-MUTATION]
|
S
|
[1], [1]
|
|
CsgD |
activator |
csgBp
|
Sigma70 |
-80.5
|
-172.5
|
csgB,
csgA,
csgC
|
atttacgtggGTTTTAATACTTTGGtatgaactaa
tagttcatacCAAAGTATTAAAACccacgtaaat
|
1103772
|
1103786
|
[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]
|
S
|
[2], [2]
|
|
CsgD |
activator |
csgBp
|
Sigma70 |
-57.5
|
-149.5
|
csgB,
csgA,
csgC
|
ggtatgaactAAAAAAGAAAAATACaacgcgcggg
ggtatgaactAAAAAAGAAAAATAcaacgcgcgg
|
1103795
|
1103809
|
[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]
|
S
|
[2], [2]
|
|
CsgD |
activator |
csgBp
|
Sigma70 |
-38.0
|
-130.0
|
csgB,
csgA,
csgC
|
atacaacgcgCGGGTGAGTTAttaaaaatat
atacaacgcgCGGGTGAGTTAttaaaaatat
|
1103816
|
1103826
|
[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IMP-SITE-MUTATION]
|
S
|
[1], [1]
|
|
CsgD |
activator |
csgBp
|
Sigma70 |
-27.5
|
-119.5
|
csgB,
csgA,
csgC
|
gcgggtgagtTATTAAAAATATTTCcgcagacata
atgtctgcggAAATATTTTTAATAactcacccgc
|
1103825
|
1103839
|
[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]
|
S
|
[2], [2]
|
|
CsgD |
activator |
csgBp2
|
Sigma38 |
-80.5
|
-172.5
|
csgB,
csgA,
csgC
|
atttacgtggGTTTTAATACTTTGGtatgaactaa
|
1103772
|
1103786
|
[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]
|
S
|
[2], [2]
|
|
CsgD |
activator |
csgBp2
|
Sigma38 |
-57.5
|
-149.5
|
csgB,
csgA,
csgC
|
ggtatgaactAAAAAAGAAAAATACaacgcgcggg
|
1103795
|
1103809
|
[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]
|
S
|
[2], [2]
|
|
CsgD |
activator |
csgBp2
|
Sigma38 |
-38.0
|
-130.0
|
csgB,
csgA,
csgC
|
atacaacgcgCGGGTGAGTTAttaaaaatat
|
1103816
|
1103826
|
[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IMP-SITE-MUTATION]
|
S
|
[1], [1]
|
|
CsgD |
activator |
csgBp2
|
Sigma38 |
-27.5
|
-119.5
|
csgB,
csgA,
csgC
|
gcgggtgagtTATTAAAAATATTTCcgcagacata
|
1103825
|
1103839
|
[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]
|
S
|
[2], [2]
|
|
CsgD |
activator |
csgDp1
|
Sigma70 |
-166.5
|
-314.5
|
csgD,
csgE,
csgF,
csgG
|
gcattattagTAAGTTATCACCATTtgtatgattt
aaatcatacaAATGGTGATAACTTactaataatg
|
1103504
|
1103518
|
[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]
|
S
|
[2], [2]
|
|
CsgD |
activator |
csgDp1
|
Sigma70 |
-118.5
|
-266.5
|
csgD,
csgE,
csgF,
csgG
|
aataaaaaccAAATGTACAACTTTTctatcatttc
gaaatgatagAAAAGTTGTACATTtggtttttat
|
1103456
|
1103470
|
[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]
|
S
|
[2], [2]
|
|
CsgD |
activator |
csgDp1
|
Sigma70 |
9.5
|
-139.5
|
csgD,
csgE,
csgF,
csgG
|
gattgaaatcAGATGTAATCCATTAgttttatatt
aatataaaacTAATGGATTACATCtgatttcaat
|
1103329
|
1103343
|
[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]
|
S
|
[2], [2]
|
|
CsgD |
activator |
csgDp1
|
Sigma70 |
29.5
|
-119.5
|
csgD,
csgE,
csgF,
csgG
|
cattagttttATATTTTACCCATTTagggctgatt
aatcagccctAAATGGGTAAAATAtaaaactaat
|
1103309
|
1103323
|
[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]
|
S
|
[2], [2]
|
|
CsgD |
activator |
csgDp3
|
Sigma38 |
-166.5
|
-314.5
|
csgD,
csgE,
csgF,
csgG
|
gcattattagTAAGTTATCACCATTtgtatgattt
|
1103504
|
1103518
|
[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]
|
S
|
[2], [2]
|
|
CsgD |
activator |
csgDp3
|
Sigma38 |
-118.5
|
-266.5
|
csgD,
csgE,
csgF,
csgG
|
aataaaaaccAAATGTACAACTTTTctatcatttc
|
1103456
|
1103470
|
[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]
|
S
|
[2], [2]
|
|
CsgD |
activator |
csgDp3
|
Sigma38 |
9.5
|
-139.5
|
csgD,
csgE,
csgF,
csgG
|
gattgaaatcAGATGTAATCCATTAgttttatatt
|
1103329
|
1103343
|
[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]
|
S
|
[2], [2]
|
|
CsgD |
activator |
csgDp3
|
Sigma38 |
29.5
|
-119.5
|
csgD,
csgE,
csgF,
csgG
|
cattagttttATATTTTACCCATTTagggctgatt
|
1103309
|
1103323
|
[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]
|
S
|
[2], [2]
|
|
CsgD |
repressor |
flgMp
|
Sigma28 |
1.5
|
-36.5
|
flgM,
flgN
|
cttgccgataAATAAGCAACACATGataaaagcgc
|
1130158
|
1130172
|
[COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]
|
S
|
[3], [3]
|
|
CsgD |
repressor |
flgMp
|
Sigma28 |
17.5
|
-20.5
|
flgM,
flgN
|
caacacatgaTAAAAGCGCCCTCAAtgaggaataa
|
1130142
|
1130156
|
[COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]
|
S
|
[3], [3]
|
|
CsgD |
repressor |
fliAp1
|
Sigma70 |
-10.5
|
-40.5
|
fliA,
fliZ,
tcyJ
|
aaaccctgcaGAAACGGATAATCATgccgataact
|
2001823
|
2001837
|
[COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]
|
S
|
[3], [3]
|
|
CsgD |
repressor |
fliEp1
|
Sigma70 |
-39.5
|
-61.5
|
fliE
|
ttttttgttgCTATTTAGCGCCTTTgtcttattga
tcaataagacAAAGGCGCTAAATAgcaacaaaaa
|
2013069
|
2013083
|
[COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]
|
S
|
[2], [2]
|
|
CsgD |
repressor |
fliEp1
|
Sigma70 |
-24.5
|
-46.5
|
fliE
|
tagcgcctttGTCTTATTGACTTACtggtaggctt
aagcctaccaGTAAGTCAATAAGAcaaaggcgct
|
2013054
|
2013068
|
[COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]
|
S
|
[2], [2]
|
|
CsgD |
repressor |
fliEp2
|
Sigma28 |
18.5
|
-61.5
|
fliE
|
ttttttgttgCTATTTAGCGCCTTTgtcttattga
tcaataagacAAAGGCGCTAAATAgcaacaaaaa
|
2013069
|
2013083
|
[COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]
|
S
|
[2], [2]
|
|
CsgD |
repressor |
fliEp2
|
Sigma28 |
33.5
|
-46.5
|
fliE
|
tagcgcctttGTCTTATTGACTTACtggtaggctt
aagcctaccaGTAAGTCAATAAGAcaaaggcgct
|
2013054
|
2013068
|
[COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]
|
S
|
[2], [2]
|
|
CsgD |
repressor |
fliFp1
|
Sigma70 |
-85.5
|
-168.5
|
fliF,
fliG,
fliH,
fliI,
fliJ,
fliK
|
aagcctaccaGTAAGTCAATAAGACaaaggcgcta
aagcctaccaGTAAGTCAATAAGAcaaaggcgct
|
2013054
|
2013068
|
[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]
|
S
|
[2], [2]
|
|
CsgD |
repressor |
fliFp1
|
Sigma70 |
-70.5
|
-153.5
|
fliF,
fliG,
fliH,
fliI,
fliJ,
fliK
|
tcaataagacAAAGGCGCTAAATAGcaacaaaaaa
tcaataagacAAAGGCGCTAAATAgcaacaaaaa
|
2013069
|
2013083
|
[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]
|
S
|
[2], [2]
|
|
CsgD |
activator |
iraPp1
|
Sigma70 |
nd
|
nd
|
iraP
|
|
nd
|
nd
|
[EXP-IEP-GENE-EXPRESSION-ANALYSIS]
|
W
|
[4], [5]
|
|
CsgD |
activator |
nlpAp
|
nd |
-91.5
|
-115.5
|
nlpA
|
cgtggtcagtAAGAAGTGCCAGACTttatattcca
gtggtcagtaAGAAGTGCCAGACTttatattcca
|
3840102
|
3840116
|
[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]
|
S
|
[2], [2]
|
|
CsgD |
activator |
nlpAp
|
nd |
-76.5
|
-100.5
|
nlpA
|
gtgccagactTTATATTCCACTTTTattccttttt
aaaaaggaatAAAAGTGGAATATAaagtctggca
|
3840087
|
3840101
|
[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]
|
S
|
[2], [2]
|
|
CsgD |
repressor |
pepDp3
|
Sigma70 |
2.0
|
-20.0
|
pepD
|
tactgttttgCGGGTGATCGAcaaggagact
tactgttttgCGGGTGATCGAcaaggagact
|
255731
|
255741
|
[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]
|
W
|
[1], [1]
|
|
CsgD |
repressor |
ubiTp2
|
nd |
-12.5
|
-37.5
|
ubiT,
yhbS
|
gttatttttcTGATATGGCAAAATAggatgattgt
ttatttttctGATATGGCAAAATAggatgattgt
|
3301307
|
3301321
|
[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]
|
S
|
[2], [2]
|
|
CsgD |
repressor |
ubiTp2
|
nd |
15.5
|
-10.5
|
ubiT,
yhbS
|
atgattgttgAAACAGGGAGTAAAActcgtgttgg
tgattgttgaAACAGGGAGTAAAActcgtgttgg
|
3301280
|
3301294
|
[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]
|
S
|
[2], [2]
|
|
CsgD |
activator |
wrbAp
|
Sigma38 |
-166.5
|
-216.5
|
wrbA,
yccJ
|
gcttcttagcGAGAATAGATATCATctccaataat
cttcttagcgAGAATAGATATCATctccaataat
|
1067918
|
1067932
|
[COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]
|
S
|
[2], [2]
|
|
CsgD |
activator |
wrbAp
|
Sigma38 |
-136.5
|
-186.5
|
wrbA,
yccJ
|
ataattatccATAAGCCGCTCTTATgattaaaaaa
ttttttaatcATAAGAGCGGCTTAtggataatta
|
1067888
|
1067902
|
[COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]
|
S
|
[2], [2]
|
|
CsgD |
activator |
wrbAp
|
Sigma38 |
-114.5
|
-164.5
|
wrbA,
yccJ
|
tatgattaaaAAAACGCGATGAGATaaaaatgtgt
atgattaaaaAAACGCGATGAGATaaaaatgtgt
|
1067866
|
1067880
|
[COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]
|
S
|
[2], [2]
|
|
CsgD |
activator |
yccTp
|
nd |
-42.5
|
-106.5
|
yccT
|
aaccatgcagCTAATACGAATGAATgagagcaaaa
accatgcagcTAATACGAATGAATgagagcaaaa
|
1027873
|
1027887
|
[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]
|
S
|
[2], [2]
|