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Synonyms: LsrR, LsrR-(2S)-2-hydroxy-3,4-dioxopentyl phosphate, LsrR-autoinducer 2, LsrR-(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran |
Summary:
Using particular analysis and high-throughput analysis (microarrays), it was established that LsrR regulates expression of many genes involved in several processes, such as autoinducer 2 uptake and processing [1, 5], biofilm architecture [5, 6], host invasion, stress responses, and foreign DNA, among others [5]. It also regulates the expression of small riboregulators [5]. LrsR pertains to the quorum-sensing system, which involves autoinducer-based bacterial cell-to-cell communication [7]. It was demonstrated in Salmonella enterica serovar Typhimurium that LsrR directly senses and binds the molecule 4,5-dihydroxy-2,3-pentanedione (DPD), phosphorylated [8] and dephosphorylated [5]. Read more > |
Transcription factor | ![]() ![]() |
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TF conformation(s): |
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Evolutionary Family: | Sugar_binding domain | |||||||||||||||||||||||||||||||||||
TFBs length: | 30 | |||||||||||||||||||||||||||||||||||
TFBs symmetry: | inverted-repeat | |||||||||||||||||||||||||||||||||||
Connectivity class: | Local Regulator | |||||||||||||||||||||||||||||||||||
Gene name: | lsrR | |||||||||||||||||||||||||||||||||||
Genome position: | 1600288-1601241 | |||||||||||||||||||||||||||||||||||
Length: | 954 bp / 317 aa | |||||||||||||||||||||||||||||||||||
Operon name: | lsrRK | |||||||||||||||||||||||||||||||||||
TU(s) encoding the TF: |
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Regulon |
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Regulated gene(s) | lsrA, lsrB, lsrC, lsrD, lsrF, lsrG, lsrK, lsrR, tam | ||||||
Multifun term(s) of regulated gene(s) |
MultiFun Term (List of genes associated to the multifun term)
ABC superfamily, membrane component (2)
membrane (2)
ABC superfamily ATP binding cytoplasmic component (1)
ABC superfamily, periplasmic binding component (1)
regulation (1)
Read more >
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Regulated operon(s) | lsrACDBFG-tam, lsrRK | ||||||
First gene in the operon(s) | lsrA, lsrR | ||||||
Simple and complex regulons | CRP,LsrR | ||||||
Simple and complex regulatory phrases | Regulatory phrase (List of promoters regulated by the phrase) |
Transcription factor regulation |
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Functional conformation | Function | Promoter | Sigma factor | Central Rel-Pos | Distance to first Gene | Genes | Sequence | LeftPos | RightPos | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | References | |
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LsrR | repressor | lsrAp | Sigma38 | 11.5 | -19.5 | lsrA, lsrC, lsrD, lsrB, lsrF, lsrG, tam |
atacatttgtTCAAAACTCACCTGCAAAACTGAACGGGGGaaatatgcaa
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1601456 | 1601485 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION] | C | [1], [2], [2] | |
LsrR | repressor | lsrRp | Sigma70 | -18.5 | -34.5 | lsrR, lsrK |
gagcaagaacTGAACAATTGCATTAAAGATTTAAATATGTtcaaagtgaa
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1601261 | 1601290 | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION] | C | [2], [2], [3], [4], [4] |
Evolutionary conservation of regulatory elements | ![]() |
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Reference(s) |
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